Wall clock time and date at job start Mon Mar 30 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 C 1.53002 * 109.47158 * 119.99885 * 2 1 3 5 5 C 1.52999 * 109.46829 * 179.97438 * 4 2 1 6 6 O 1.42896 * 109.47050 * 299.99973 * 4 2 1 7 7 C 1.50708 * 109.46934 * 60.00448 * 4 2 1 8 8 C 1.38632 * 119.74401 * 209.99895 * 7 4 2 9 9 C 1.37624 * 120.24747 * 179.97438 * 8 7 4 10 10 C 1.40715 * 119.74131 * 0.02562 * 9 8 7 11 11 C 1.41399 * 120.23986 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00215 * 335.39104 * 11 10 9 13 13 C 1.39941 * 119.99722 * 155.39887 * 11 10 9 14 14 N 1.30829 * 120.00095 * 342.38320 * 13 11 10 15 15 Si 1.86803 * 120.00143 * 162.39016 * 13 11 10 16 16 H 1.48503 * 109.47194 * 94.65747 * 15 13 11 17 17 H 1.48490 * 109.47218 * 214.65999 * 15 13 11 18 18 H 1.48496 * 109.46907 * 334.66335 * 15 13 11 19 19 C 1.40715 * 119.51432 * 0.25861 * 10 9 8 20 20 C 1.37620 * 119.74069 * 359.46511 * 19 10 9 21 21 H 1.08996 * 109.47123 * 299.99758 * 1 2 3 22 22 H 1.08998 * 109.47127 * 60.00250 * 1 2 3 23 23 H 1.09006 * 109.46948 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47183 * 239.99666 * 2 1 3 25 25 H 1.08997 * 109.46719 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46975 * 299.99843 * 3 2 1 27 27 H 1.08996 * 109.46984 * 60.00157 * 3 2 1 28 28 H 1.09003 * 109.47768 * 300.00204 * 5 4 2 29 29 H 1.08996 * 109.46923 * 60.00368 * 5 4 2 30 30 H 1.09001 * 109.47229 * 180.02562 * 5 4 2 31 31 H 0.96704 * 113.99885 * 60.00435 * 6 4 2 32 32 H 1.08008 * 119.87904 * 359.97382 * 8 7 4 33 33 H 1.07996 * 120.12669 * 180.02562 * 9 8 7 34 34 H 0.96995 * 120.00023 * 180.02562 * 14 13 11 35 35 H 1.07995 * 120.12909 * 179.72124 * 19 10 9 36 36 H 1.08007 * 119.86999 * 180.27121 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 8 1.5637 -0.0476 2.4160 7 6 1.5378 -2.1421 1.2492 8 6 1.3085 -2.7907 2.4528 9 6 0.8493 -4.0880 2.4649 10 6 0.6131 -4.7562 1.2492 11 6 0.1419 -6.0893 1.2493 12 1 0.3291 -6.7283 2.0997 13 6 -0.5670 -6.5809 0.1474 14 7 -1.0925 -5.7501 -0.7159 15 14 -0.7631 -8.4232 -0.0909 16 1 -2.0539 -8.8638 0.4966 17 1 -0.7460 -8.7393 -1.5417 18 1 0.3547 -9.1312 0.5832 19 6 0.8551 -4.0900 0.0336 20 6 1.3087 -2.7908 0.0456 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.9331 -1.2358 0.3589 29 1 3.9337 0.3058 1.2487 30 1 3.9334 -1.2359 2.1386 31 1 0.5997 -0.0095 2.4821 32 1 1.4909 -2.2759 3.3847 33 1 0.6710 -4.5912 3.4037 34 1 -1.5842 -6.0908 -1.4795 35 1 0.6815 -4.5949 -0.9051 36 1 1.4909 -2.2760 -0.8862 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260386354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:40 Heat of formation + Delta-G solvation = -68.053008 kcal Electronic energy + Delta-G solvation = -16790.204623 eV Core-core repulsion = 14237.507144 eV Total energy + Delta-G solvation = -2552.697479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68601 -38.32810 -35.40977 -34.76415 -32.13554 -31.15383 -30.52573 -28.12853 -26.70897 -24.25622 -22.89360 -22.13217 -20.26878 -19.21783 -17.90412 -17.19844 -16.79331 -15.72535 -15.61737 -14.99691 -14.82831 -14.66617 -13.93013 -13.82072 -13.66061 -13.24374 -13.19778 -13.00461 -12.81774 -12.77731 -12.65347 -12.49252 -12.30937 -12.00751 -11.72972 -11.66382 -11.30883 -11.11004 -10.98311 -10.47024 -9.32091 -9.17980 -8.63713 -6.33184 0.96101 1.16222 1.37027 1.47792 1.53347 2.20231 2.71784 3.49595 3.72043 3.91437 4.03992 4.13885 4.43750 4.51492 4.58519 4.69565 4.75907 4.87744 4.92788 5.00078 5.04684 5.10736 5.12824 5.17408 5.23758 5.36536 5.39275 5.48852 5.55545 5.57199 5.72366 6.00037 6.11053 6.21013 6.40992 6.71188 6.94044 6.95149 7.04681 8.32972 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.043766 B = 0.006499 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.605977 B = 4307.236809 C = 4588.941276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.137 4.137 4 C 0.197 3.803 5 C -0.131 4.131 6 O -0.565 6.565 7 C -0.222 4.222 8 C -0.079 4.079 9 C -0.247 4.247 10 C 0.079 3.921 11 C -0.504 4.504 12 H 0.071 0.929 13 C 0.036 3.964 14 N -0.825 5.825 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.261 1.261 19 C -0.190 4.190 20 C -0.087 4.087 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.377 0.623 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 8.590 -1.100 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.156 3.844 5 C -0.188 4.188 6 O -0.372 6.372 7 C -0.223 4.223 8 C -0.098 4.098 9 C -0.266 4.266 10 C 0.077 3.923 11 C -0.534 4.534 12 H 0.089 0.911 13 C -0.178 4.178 14 N -0.451 5.451 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.185 1.185 19 C -0.209 4.209 20 C -0.105 4.105 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.226 0.774 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.841 8.675 -1.199 9.563 hybrid contribution -1.013 -1.258 -0.196 1.627 sum 2.828 7.417 -1.395 8.060 Atomic orbital electron populations 1.21841 0.95302 1.01327 1.02081 1.21686 0.96254 0.97431 0.97924 1.21769 1.01243 0.94375 1.01997 1.19711 0.93865 0.86134 0.84645 1.21768 0.92657 1.02450 1.01916 1.86392 1.27179 1.78870 1.44784 1.19987 1.11883 0.97856 0.92578 1.20566 0.98172 0.93757 0.97258 1.21147 1.12689 0.96307 0.96503 1.17971 0.89078 0.93322 0.91941 1.19820 1.32662 0.97622 1.03258 0.91098 1.26716 0.92347 1.04772 0.93988 1.69873 1.24898 1.38641 1.11646 0.85231 0.79522 0.76522 0.78663 1.18747 1.18892 1.18468 1.21260 1.06071 0.95905 0.97710 1.20755 0.98774 0.94173 0.96845 0.92077 0.91750 0.94262 0.91109 0.92026 0.91972 0.92347 0.91359 0.90512 0.93438 0.77385 0.87207 0.89169 0.90198 0.88378 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.56 71.98 0.62 -3.65 16 2 C -0.11 -3.21 1.83 -10.79 -0.02 -3.23 16 3 C -0.14 -3.09 8.70 71.98 0.63 -2.46 16 4 C 0.20 6.37 0.67 -11.54 -0.01 6.36 16 5 C -0.13 -3.89 8.47 71.98 0.61 -3.28 16 6 O -0.56 -17.77 11.23 -148.98 -1.67 -19.45 16 7 C -0.22 -9.09 4.08 -19.67 -0.08 -9.17 16 8 C -0.08 -3.53 9.32 22.22 0.21 -3.32 16 9 C -0.25 -12.49 9.80 22.73 0.22 -12.27 16 10 C 0.08 4.36 5.57 -21.29 -0.12 4.24 16 11 C -0.50 -27.87 9.05 23.46 0.21 -27.66 16 12 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 13 C 0.04 1.87 5.14 85.25 0.44 2.31 16 14 N -0.82 -43.46 10.97 21.83 0.24 -43.22 16 15 Si 0.98 38.74 29.59 68.60 2.03 40.77 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 17 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 C -0.19 -10.00 8.70 22.73 0.20 -9.80 16 20 C -0.09 -3.90 7.74 22.22 0.17 -3.73 16 21 H 0.06 1.57 6.78 -2.39 -0.02 1.56 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.39 6.17 -2.38 -0.01 1.38 16 24 H 0.07 2.06 6.49 -2.38 -0.02 2.05 16 25 H 0.06 1.30 6.43 -2.39 -0.02 1.28 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.32 7.68 -2.39 -0.02 1.31 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 1.93 6.43 -2.39 -0.02 1.92 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.38 10.64 7.33 -74.05 -0.54 10.10 16 32 H 0.11 4.45 7.47 -2.91 -0.02 4.43 16 33 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 35 H 0.10 5.43 6.18 -2.91 -0.02 5.41 16 36 H 0.11 4.35 6.13 -2.91 -0.02 4.33 16 Total: -1.00 -58.66 284.64 4.20 -54.46 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.53 Total: 33.12 kcal Atomic # 6 Polarization: -68.75 SS G_CDS: 3.08 Total: -65.67 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.24 Total: -43.22 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.67 Total: -19.45 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -58.66 4.20 -54.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260386354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.595 kcal (2) G-P(sol) polarization free energy of solvation -58.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds