Wall clock time and date at job start Mon Mar 30 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46948 * 2 1 4 4 O 1.42901 * 109.46968 * 240.00105 * 2 1 3 5 5 C 1.50700 * 109.47170 * 120.00134 * 2 1 3 6 6 C 1.38263 * 119.99864 * 85.18882 * 5 2 1 7 7 C 1.38212 * 119.99694 * 180.23037 * 6 5 2 8 8 C 1.38257 * 120.00042 * 359.81424 * 7 6 5 9 9 C 1.38209 * 120.00404 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00209 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47053 * 62.80738 * 10 9 8 12 12 C 1.53010 * 109.46891 * 182.80483 * 10 9 8 13 13 C 1.50701 * 109.47081 * 302.80458 * 10 9 8 14 14 H 1.07994 * 119.99615 * 359.91615 * 13 10 9 15 15 C 1.37879 * 119.99799 * 179.91564 * 13 10 9 16 16 N 1.31512 * 119.99847 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99730 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47302 * 60.00196 * 17 15 13 19 19 H 1.48502 * 109.46997 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47222 * 300.00021 * 17 15 13 21 21 C 1.38211 * 120.00015 * 265.00143 * 5 2 1 22 22 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46776 * 299.99561 * 1 2 3 24 24 H 1.08995 * 109.46898 * 59.99263 * 1 2 3 25 25 H 0.96698 * 113.99804 * 60.00261 * 4 2 1 26 26 H 1.07996 * 119.99726 * 0.02562 * 6 5 2 27 27 H 1.07998 * 119.99812 * 179.78649 * 7 6 5 28 28 H 1.08001 * 120.00243 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47105 * 60.00388 * 11 10 9 30 30 H 1.08997 * 109.46631 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.46842 * 299.99961 * 11 10 9 32 32 H 1.08999 * 109.46988 * 60.00271 * 12 10 9 33 33 H 1.08996 * 109.46795 * 179.97438 * 12 10 9 34 34 H 1.08995 * 109.47100 * 300.00039 * 12 10 9 35 35 H 0.97002 * 119.99866 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.00023 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.1682 -2.0864 1.2272 7 6 2.6244 -2.7384 2.3573 8 6 2.9486 -2.0143 3.4896 9 6 2.8171 -0.6385 3.4914 10 6 3.1699 0.1506 4.7258 11 6 4.6580 -0.0248 5.0352 12 6 2.8698 1.6319 4.4873 13 6 2.3527 -0.3464 5.8904 14 1 1.6473 -1.1520 5.7502 15 6 2.5056 0.2275 7.1347 16 7 3.3643 1.2089 7.3051 17 14 1.4921 -0.3880 8.5780 18 1 1.7813 -1.8263 8.8083 19 1 1.8410 0.3885 9.7948 20 1 0.0480 -0.2153 8.2783 21 6 2.3611 0.0138 2.3608 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.7210 -0.2700 -1.9979 26 1 1.9146 -2.6519 0.3428 27 1 2.7271 -3.8134 2.3560 28 1 3.3047 -2.5238 4.3728 29 1 5.2491 0.3347 4.1929 30 1 4.9133 0.5463 5.9278 31 1 4.8718 -1.0800 5.2050 32 1 1.8096 1.7569 4.2669 33 1 3.1246 2.2026 5.3803 34 1 3.4608 1.9913 3.6450 35 1 3.4716 1.6130 8.1804 36 1 2.2583 1.0889 2.3621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:14 Heat of formation + Delta-G solvation = -56.808998 kcal Electronic energy + Delta-G solvation = -16661.169584 eV Core-core repulsion = 14108.959682 eV Total energy + Delta-G solvation = -2552.209902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65793 -38.33616 -36.71159 -33.54434 -32.96318 -30.43522 -29.80485 -27.66686 -27.19185 -24.57657 -23.77014 -21.80982 -20.38713 -18.03879 -17.93883 -17.59435 -16.57794 -15.87843 -15.78550 -15.17412 -14.89842 -14.61470 -14.54453 -13.69827 -13.51085 -13.28778 -13.24225 -13.03319 -12.77407 -12.63631 -12.50245 -12.46562 -12.19053 -12.10544 -11.74772 -11.33688 -11.09375 -10.97643 -10.78831 -10.36271 -9.54283 -9.24985 -7.99650 -6.15718 0.58727 0.72889 1.42918 1.43793 1.50833 2.45436 3.02021 3.23410 3.40057 3.94517 4.12626 4.25396 4.29894 4.38900 4.45602 4.70411 4.79249 4.80695 4.89317 4.90478 4.98182 5.10026 5.11578 5.27783 5.29899 5.39438 5.41998 5.61435 5.65423 5.73057 5.80486 5.89268 6.14877 6.28430 6.34272 6.47847 6.88692 6.97556 7.51168 8.98908 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.006779 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.996246 B = 4129.232248 C = 4181.548699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.069 0.931 4 O -0.576 6.576 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.053 4.053 10 C 0.087 3.913 11 C -0.117 4.117 12 C -0.121 4.121 13 C -0.514 4.514 14 H 0.044 0.956 15 C 0.024 3.976 16 N -0.904 5.904 17 Si 0.945 3.055 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.277 1.277 21 C -0.135 4.135 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.396 0.604 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 -2.104 -13.249 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.090 3.910 3 H 0.087 0.913 4 O -0.385 6.385 5 C -0.095 4.095 6 C -0.140 4.140 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.053 4.053 10 C 0.087 3.913 11 C -0.175 4.175 12 C -0.179 4.179 13 C -0.552 4.552 14 H 0.062 0.938 15 C -0.175 4.175 16 N -0.543 5.543 17 Si 0.771 3.229 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.203 1.203 21 C -0.153 4.153 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.246 0.754 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.126 0.874 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.446 -2.358 -12.655 13.327 hybrid contribution -0.632 0.135 0.880 1.092 sum -4.078 -2.223 -11.775 12.658 Atomic orbital electron populations 1.22419 0.94351 1.02887 1.03360 1.20455 0.93582 0.94066 0.82926 0.91327 1.86503 1.77368 1.58092 1.16504 1.19853 1.00448 0.94468 0.94692 1.20958 1.00882 0.94043 0.98080 1.21344 0.99773 1.00432 0.92923 1.21104 1.01270 0.94145 0.98250 1.20449 0.95111 0.94489 0.95254 1.17236 0.93041 0.91689 0.89326 1.21667 0.96586 0.99092 1.00140 1.21729 0.97808 0.98596 0.99744 1.21262 1.22031 1.18071 0.93837 0.93770 1.25519 0.96230 0.95175 1.00543 1.69924 1.35941 1.24997 1.23468 0.85826 0.79314 0.78407 0.79341 1.20097 1.20852 1.20271 1.21068 1.01309 1.00138 0.92809 0.92336 0.92212 0.89420 0.75363 0.84957 0.84432 0.87393 0.96072 0.91729 0.95655 0.95500 0.92045 0.95247 0.93071 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.52 71.98 0.69 -2.94 16 2 C 0.15 3.73 3.79 29.85 0.11 3.84 16 3 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 4 O -0.58 -13.05 12.46 -148.98 -1.86 -14.90 16 5 C -0.09 -3.17 5.01 -19.86 -0.10 -3.27 16 6 C -0.12 -4.01 9.35 22.27 0.21 -3.80 16 7 C -0.13 -4.40 10.05 22.27 0.22 -4.17 16 8 C -0.13 -5.36 8.64 22.27 0.19 -5.17 16 9 C -0.05 -2.34 4.72 -19.87 -0.09 -2.44 16 10 C 0.09 4.31 0.58 -53.67 -0.03 4.28 16 11 C -0.12 -5.75 8.09 71.98 0.58 -5.16 16 12 C -0.12 -5.79 6.91 71.99 0.50 -5.29 16 13 C -0.51 -27.86 7.62 25.60 0.20 -27.66 16 14 H 0.04 2.44 7.52 -2.91 -0.02 2.41 16 15 C 0.02 1.32 5.15 84.66 0.44 1.75 16 16 N -0.90 -49.91 9.35 21.45 0.20 -49.71 16 17 Si 0.94 43.30 29.54 68.60 2.03 45.33 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.14 -5.27 8.61 22.27 0.19 -5.08 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.40 4.73 9.08 -74.06 -0.67 4.06 16 26 H 0.13 3.83 7.62 -2.91 -0.02 3.81 16 27 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.11 4.61 7.68 -2.91 -0.02 4.59 16 29 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 3.43 6.06 -2.39 -0.01 3.42 16 31 H 0.02 1.19 7.55 -2.39 -0.02 1.17 16 32 H 0.03 1.23 7.64 -2.39 -0.02 1.21 16 33 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 34 H 0.03 1.24 7.38 -2.39 -0.02 1.23 16 35 H 0.26 13.80 8.31 -92.71 -0.77 13.02 16 36 H 0.12 4.59 5.90 -2.91 -0.02 4.57 16 Total: -1.00 -60.90 290.22 3.86 -57.04 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.39 Total: 17.37 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.10 Total: -55.12 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.20 Total: -49.71 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.86 Total: -14.90 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -60.90 3.86 -57.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.233 kcal (2) G-P(sol) polarization free energy of solvation -60.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds