Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47004 * 271.55570 * 3 2 1 5 5 H 1.48497 * 109.47214 * 31.55702 * 3 2 1 6 6 H 1.48496 * 109.46721 * 151.55825 * 3 2 1 7 7 C 1.39692 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00133 * 343.94620 * 7 2 1 9 9 C 1.41599 * 119.99855 * 163.94914 * 7 2 1 10 10 C 1.41878 * 126.55706 * 341.51912 * 9 7 2 11 11 N 1.30328 * 108.04617 * 180.23270 * 10 9 7 12 12 N 1.39876 * 109.23196 * 359.77856 * 11 10 9 13 13 H 0.96992 * 125.67388 * 180.02562 * 12 11 10 14 14 C 1.34505 * 108.64585 * 359.97438 * 12 11 10 15 15 C 1.50699 * 126.40681 * 179.97438 * 14 12 11 16 16 C 1.54076 * 108.87420 * 63.00084 * 15 14 12 17 17 C 1.54256 * 112.94858 * 197.39293 * 16 15 14 18 18 C 1.50475 * 112.39243 * 318.57947 * 17 16 15 19 19 C 1.54247 * 108.67993 * 93.93112 * 18 17 16 20 20 C 1.45538 * 112.40804 * 279.91811 * 19 18 17 21 21 C 1.50473 * 108.87831 * 300.03107 * 15 14 12 22 22 H 0.96998 * 120.00310 * 359.97438 * 1 2 3 23 23 H 1.07998 * 125.98216 * 0.02562 * 10 9 7 24 24 H 1.08996 * 108.85768 * 181.46333 * 15 14 12 25 25 H 1.08999 * 108.81581 * 318.37271 * 16 15 14 26 26 H 1.09011 * 108.81097 * 76.64879 * 16 15 14 27 27 H 1.09000 * 109.18650 * 197.66385 * 17 16 15 28 28 H 1.09000 * 108.68568 * 79.15579 * 17 16 15 29 29 H 1.09008 * 109.62436 * 334.13164 * 18 17 16 30 30 H 1.08999 * 109.63273 * 213.74321 * 18 17 16 31 31 H 1.08996 * 108.89259 * 40.67459 * 19 18 17 32 32 H 1.08999 * 108.88911 * 159.25756 * 19 18 17 33 33 H 1.09002 * 108.89524 * 182.69041 * 20 19 18 34 34 H 1.09001 * 108.89324 * 301.27720 * 20 19 18 35 35 H 1.08995 * 109.63035 * 95.21396 * 21 15 14 36 36 H 1.09000 * 109.62782 * 334.63554 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4588 2.0654 -1.3996 5 1 1.4585 2.6429 0.7327 6 1 3.5578 1.4309 0.6668 7 6 2.0087 -1.2098 0.0005 8 1 1.5003 -2.1268 0.2596 9 6 3.3833 -1.2338 -0.3385 10 6 4.0989 -0.2280 -1.0379 11 7 5.3355 -0.6216 -1.1577 12 7 5.4816 -1.8732 -0.5505 13 1 6.3038 -2.3852 -0.5007 14 6 4.2923 -2.2479 -0.0462 15 6 3.9968 -3.5286 0.6909 16 6 4.8249 -3.5585 1.9899 17 6 4.9355 -4.9709 2.6003 18 6 3.6354 -5.7260 2.5372 19 6 3.6256 -6.5867 1.2573 20 6 3.2831 -5.8146 0.0721 21 6 4.3018 -4.6922 -0.2131 22 1 -0.4850 0.8400 0.0004 23 1 3.6897 0.6999 -1.4093 24 1 2.9380 -3.5505 0.9488 25 1 5.8274 -3.1879 1.7763 26 1 4.3568 -2.8986 2.7204 27 1 5.2447 -4.8876 3.6422 28 1 5.6946 -5.5295 2.0528 29 1 2.8039 -5.0217 2.5112 30 1 3.5430 -6.3696 3.4121 31 1 4.6139 -7.0253 1.1194 32 1 2.8975 -7.3889 1.3770 33 1 3.2460 -6.4843 -0.7870 34 1 2.2988 -5.3683 0.2140 35 1 5.3107 -5.0546 -0.0158 36 1 4.2195 -4.3787 -1.2538 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260467128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = 22.336023 kcal Electronic energy + Delta-G solvation = -16969.902051 eV Core-core repulsion = 14453.416886 eV Total energy + Delta-G solvation = -2516.485165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72392 -39.46681 -35.30250 -34.15108 -33.10047 -32.26307 -30.43281 -26.82263 -25.70206 -24.99350 -22.93524 -21.30763 -21.04499 -20.20387 -18.89857 -17.42783 -16.63090 -16.20630 -15.76224 -15.66370 -15.24466 -14.98359 -14.68820 -14.49890 -13.83473 -13.61055 -13.25320 -13.08282 -12.86463 -12.72522 -12.55943 -11.90591 -11.62636 -11.56836 -11.45545 -11.18214 -11.15849 -11.14517 -10.99673 -10.96401 -10.03511 -9.31499 -8.60175 -6.06863 1.09642 1.26735 1.45520 1.48618 1.99046 2.22869 2.38360 3.33779 3.71659 3.82233 3.98255 4.14382 4.26905 4.32076 4.37732 4.47363 4.52806 4.65265 4.82634 4.90303 4.95439 5.04647 5.16967 5.22180 5.31443 5.36325 5.39980 5.42466 5.43766 5.45513 5.56705 5.63666 5.69137 5.84294 6.39407 6.79806 6.92869 6.97424 7.24832 8.52175 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.008421 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.411527 B = 3324.088658 C = 3747.550674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.038 3.962 3 Si 0.952 3.048 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.052 0.948 9 C -0.072 4.072 10 C -0.045 4.045 11 N -0.322 5.322 12 N -0.456 5.456 13 H 0.438 0.562 14 C -0.026 4.026 15 C 0.009 3.991 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.123 4.123 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.102 4.102 22 H 0.282 0.718 23 H 0.158 0.842 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 -10.727 3.875 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.070 0.930 9 C -0.082 4.082 10 C -0.228 4.228 11 N -0.148 5.148 12 N -0.170 5.170 13 H 0.283 0.717 14 C -0.154 4.154 15 C -0.012 4.012 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.161 4.161 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.140 4.140 22 H 0.091 0.909 23 H 0.175 0.825 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.342 -10.292 3.430 14.988 hybrid contribution -0.823 0.794 0.128 1.151 sum 9.519 -9.498 3.558 13.910 Atomic orbital electron populations 1.69800 1.08525 1.29866 1.43690 1.26366 0.95211 1.03085 0.92309 0.85802 0.79048 0.78186 0.79103 1.18641 1.21030 1.18522 1.18453 0.92068 0.94602 1.43773 0.92971 1.18224 0.94465 0.93970 1.01565 1.23784 0.92651 1.01586 1.04806 1.76398 1.19514 0.97479 1.21393 1.45292 1.09789 1.15238 1.46650 0.71728 1.21425 0.85722 1.00626 1.07593 1.19327 1.00221 0.88180 0.93445 1.21957 0.99046 0.98015 0.95174 1.21330 0.98143 0.94177 1.00878 1.21389 0.97759 0.98635 0.98270 1.20450 1.02621 0.97937 0.93767 1.20455 0.98286 0.97387 0.99226 1.21367 1.00350 0.94358 0.97901 0.90863 0.82485 0.91989 0.92286 0.93967 0.91262 0.90639 0.93647 0.90514 0.90662 0.91614 0.91408 0.94177 0.89766 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.75 13.94 21.79 0.30 -51.45 16 2 C 0.04 2.16 5.50 85.16 0.47 2.63 16 3 Si 0.95 44.97 24.51 68.60 1.68 46.66 16 4 H -0.26 -11.60 6.68 99.48 0.66 -10.93 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 7 C -0.45 -26.17 9.54 23.45 0.22 -25.94 16 8 H 0.05 3.21 7.29 -2.91 -0.02 3.19 16 9 C -0.07 -3.73 5.49 -21.30 -0.12 -3.85 16 10 C -0.05 -2.26 9.27 85.82 0.80 -1.46 16 11 N -0.32 -14.64 12.60 -55.94 -0.71 -15.35 16 12 N -0.46 -17.77 7.19 -45.93 -0.33 -18.10 16 13 H 0.44 13.19 8.96 -213.47 -1.91 11.27 16 14 C -0.03 -1.12 5.44 42.40 0.23 -0.89 16 15 C 0.01 0.31 2.07 -11.99 -0.02 0.28 16 16 C -0.10 -3.01 5.21 31.38 0.16 -2.84 16 17 C -0.11 -2.32 5.34 30.20 0.16 -2.16 16 18 C -0.12 -2.72 5.59 30.20 0.17 -2.55 16 19 C -0.11 -2.26 5.26 28.74 0.15 -2.11 16 20 C -0.12 -2.98 5.26 28.73 0.15 -2.83 16 21 C -0.10 -2.91 5.12 30.20 0.15 -2.76 16 22 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 23 H 0.16 7.66 4.23 -2.91 -0.01 7.65 16 24 H 0.06 2.57 5.47 -2.39 -0.01 2.56 16 25 H 0.06 1.59 7.89 -2.39 -0.02 1.58 16 26 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.37 6.65 -2.39 -0.02 1.35 16 29 H 0.04 1.25 6.97 -2.38 -0.02 1.23 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.28 7.48 -2.39 -0.02 1.26 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.23 7.46 -2.39 -0.02 1.21 16 35 H 0.08 1.94 6.99 -2.39 -0.02 1.92 16 36 H 0.04 1.45 7.71 -2.39 -0.02 1.43 16 Total: -1.00 -64.46 273.79 2.55 -61.91 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -0.93 Total: 20.81 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 2.53 Total: -44.48 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -0.73 Total: -84.90 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.68 Total: 46.66 kcal Total: -64.46 2.55 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260467128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.242 kcal (2) G-P(sol) polarization free energy of solvation -64.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds