Wall clock time and date at job start Mon Mar 30 2020 05:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.53001 * 109.47088 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.47679 * 119.99778 * 2 1 3 6 6 H 1.09000 * 109.47463 * 180.02562 * 5 2 1 7 7 O 1.42907 * 109.46733 * 60.00023 * 5 2 1 8 8 C 1.50700 * 109.46998 * 300.00423 * 5 2 1 9 9 C 1.38654 * 119.87625 * 84.72438 * 8 5 2 10 10 C 1.38615 * 120.49964 * 179.72013 * 9 8 5 11 11 C 1.37636 * 120.24897 * 0.55090 * 10 9 8 12 12 C 1.40699 * 119.74212 * 359.72731 * 11 10 9 13 13 C 1.41395 * 120.24134 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00290 * 155.20259 * 13 12 11 15 15 C 1.39949 * 120.00418 * 335.19789 * 13 12 11 16 16 N 1.30818 * 119.99763 * 342.30098 * 15 13 12 17 17 Si 1.86800 * 120.00112 * 162.30278 * 15 13 12 18 18 H 1.48491 * 109.47074 * 60.00131 * 17 15 13 19 19 H 1.48498 * 109.46870 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46878 * 299.99925 * 17 15 13 21 21 C 1.37597 * 119.87247 * 264.99306 * 8 5 2 22 22 H 1.08998 * 109.47006 * 299.99889 * 1 2 3 23 23 H 1.08993 * 109.47325 * 60.00119 * 1 2 3 24 24 H 1.08997 * 109.46788 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47374 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46990 * 299.99778 * 3 2 1 27 27 H 1.08998 * 109.47144 * 60.00196 * 3 2 1 28 28 H 1.08994 * 109.47327 * 299.99628 * 4 2 1 29 29 H 1.09001 * 109.47465 * 59.99885 * 4 2 1 30 30 H 1.09000 * 109.47072 * 179.97438 * 4 2 1 31 31 H 0.96695 * 113.99662 * 300.00044 * 7 5 2 32 32 H 1.07995 * 119.75170 * 359.97438 * 9 8 5 33 33 H 1.08000 * 119.87986 * 180.25449 * 10 9 8 34 34 H 1.08001 * 120.13270 * 179.70167 * 11 10 9 35 35 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12736 * 0.02725 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1301 -0.7207 1.2494 7 8 1.5638 -2.0685 1.2492 8 6 1.5378 -0.0108 2.4797 9 6 0.2780 -0.3028 2.9798 10 6 -0.1947 0.3386 4.1141 11 6 0.5793 1.2824 4.7502 12 6 1.8569 1.5910 4.2482 13 6 2.6611 2.5584 4.8937 14 1 3.7356 2.5243 4.7891 15 6 2.0650 3.5601 5.6681 16 7 0.7914 3.8242 5.5281 17 14 3.0878 4.5201 6.9016 18 1 4.1880 5.2217 6.1928 19 1 2.2274 5.5158 7.5897 20 1 3.6609 3.5856 7.9033 21 6 2.3288 0.9292 3.0993 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2493 29 1 1.6766 -0.2074 -2.1393 30 1 3.1300 -0.7208 -1.2495 31 1 0.5999 -2.1448 1.2493 32 1 -0.3380 -1.0385 2.4843 33 1 -1.1759 0.1005 4.4974 34 1 0.2072 1.7845 5.6310 35 1 0.3780 4.5182 6.0650 36 1 3.3078 1.1586 2.7052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260541967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:47 Heat of formation + Delta-G solvation = -56.424122 kcal Electronic energy + Delta-G solvation = -16849.172004 eV Core-core repulsion = 14296.978792 eV Total energy + Delta-G solvation = -2552.193213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23136 -36.66785 -34.29280 -33.55503 -29.99025 -29.78536 -27.06787 -26.68693 -25.19304 -24.90407 -20.69577 -20.37516 -18.72590 -17.34653 -16.17049 -15.27894 -14.83785 -14.63578 -14.31720 -13.80423 -13.44441 -13.12220 -12.55761 -12.32237 -12.05751 -11.78486 -11.70851 -11.57529 -11.26253 -11.21265 -11.11491 -10.76750 -10.59710 -10.47164 -10.41031 -10.33727 -9.86695 -9.44286 -9.13133 -9.05165 -7.46122 -7.25974 -6.76493 -4.36482 2.78627 2.94530 3.05903 3.08635 3.21952 3.92713 4.57791 4.95513 5.09478 5.19791 5.31202 5.68116 5.76955 5.86584 5.93169 6.02785 6.10809 6.12166 6.19119 6.32364 6.39897 6.41669 6.45893 6.52200 6.73109 6.85435 6.91980 7.05089 7.22676 7.37314 7.56977 7.85932 8.01644 8.03415 8.13875 8.28326 8.62787 8.88814 8.96523 10.18551 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.037508 B = 0.006890 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.331098 B = 4062.982631 C = 4312.043283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.135 4.135 5 C 0.161 3.839 6 H 0.092 0.908 7 O -0.563 6.563 8 C -0.088 4.088 9 C -0.229 4.229 10 C -0.106 4.106 11 C -0.163 4.163 12 C 0.111 3.889 13 C -0.466 4.466 14 H 0.076 0.924 15 C 0.077 3.923 16 N -0.795 5.795 17 Si 0.906 3.094 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.211 4.211 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.368 0.632 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.280 0.720 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -3.511 -6.800 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.192 4.192 5 C 0.102 3.898 6 H 0.110 0.890 7 O -0.369 6.369 8 C -0.088 4.088 9 C -0.248 4.248 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.108 3.892 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.421 5.421 17 Si 0.731 3.269 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.230 4.230 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.216 0.784 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.076 -3.462 -6.723 7.562 hybrid contribution -0.242 0.777 0.580 0.999 sum -0.166 -2.685 -6.143 6.707 Atomic orbital electron populations 1.21991 0.94709 1.01100 1.02717 1.21097 0.96278 0.96412 0.95409 1.21861 1.00536 0.95010 1.02424 1.21801 1.00622 1.00279 0.96541 1.20793 0.97647 0.80340 0.90999 0.88981 1.86489 1.26546 1.26859 1.97026 1.19757 0.95151 0.97816 0.96084 1.19999 0.96803 1.06429 1.01564 1.20636 0.97981 0.97607 0.96256 1.21326 0.96382 0.99069 1.01442 1.17564 0.92013 0.90288 0.89298 1.19532 0.94746 1.09286 1.25959 0.90568 1.25881 0.95063 0.96829 0.96261 1.69811 1.12063 1.26462 1.33736 0.86401 0.80435 0.79247 0.80841 1.19032 1.20369 1.18847 1.20745 1.00039 1.03594 0.98668 0.90556 0.93266 0.93413 0.93100 0.93458 0.90682 0.92452 0.93303 0.93086 0.78386 0.89811 0.89551 0.86607 0.90883 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.28 37.16 0.27 -1.94 16 2 C -0.09 -1.42 0.63 -154.51 -0.10 -1.52 16 3 C -0.14 -2.28 7.98 37.16 0.30 -1.99 16 4 C -0.14 -1.81 8.33 37.16 0.31 -1.50 16 5 C 0.16 2.88 2.60 -27.88 -0.07 2.81 16 6 H 0.09 1.68 8.05 -51.93 -0.42 1.27 16 7 O -0.56 -9.79 12.42 -35.23 -0.44 -10.23 16 8 C -0.09 -1.86 3.88 -104.70 -0.41 -2.27 16 9 C -0.23 -4.86 7.24 -39.29 -0.28 -5.15 16 10 C -0.11 -2.45 10.02 -39.66 -0.40 -2.85 16 11 C -0.16 -4.20 8.70 -38.87 -0.34 -4.53 16 12 C 0.11 2.91 5.57 -106.82 -0.60 2.31 16 13 C -0.47 -12.28 9.05 -37.74 -0.34 -12.62 16 14 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 16 N -0.80 -20.46 10.97 55.55 0.61 -19.85 16 17 Si 0.91 18.66 29.59 -169.99 -5.03 13.62 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.21 -5.01 8.01 -38.87 -0.31 -5.33 16 22 H 0.08 1.32 5.89 -51.93 -0.31 1.01 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.63 6.78 -51.93 -0.35 0.28 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.44 6.41 -51.93 -0.33 1.11 16 28 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.37 5.55 5.67 45.56 0.26 5.81 16 32 H 0.08 1.55 6.19 -52.49 -0.33 1.23 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -26.85 284.61 -7.33 -34.18 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.71 Total: 10.71 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: -2.06 Total: -32.73 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.85 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.44 Total: -10.23 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.85 -7.33 -34.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260541967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.242 kcal (2) G-P(sol) polarization free energy of solvation -26.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds