Wall clock time and date at job start Mon Mar 30 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47568 * 2 1 4 4 C 1.53005 * 109.46866 * 120.00262 * 2 1 3 5 5 C 1.52998 * 109.47186 * 66.83356 * 4 2 1 6 6 H 1.08998 * 109.47489 * 303.64545 * 5 4 2 7 7 O 1.42900 * 109.47443 * 63.64964 * 5 4 2 8 8 C 1.50698 * 109.46906 * 183.64738 * 5 4 2 9 9 C 1.37642 * 120.12947 * 265.02221 * 8 5 4 10 10 C 1.38609 * 120.24858 * 180.02562 * 9 8 5 11 11 C 1.38661 * 120.50286 * 359.97438 * 10 9 8 12 12 C 1.37590 * 120.24799 * 359.73685 * 11 10 9 13 13 C 1.40698 * 120.13183 * 84.99983 * 8 5 4 14 14 C 1.41400 * 120.23775 * 359.97438 * 13 8 5 15 15 H 1.07994 * 120.00374 * 331.44396 * 14 13 8 16 16 C 1.39952 * 120.00048 * 151.71565 * 14 13 8 17 17 N 1.30817 * 120.00173 * 162.51517 * 16 14 13 18 18 Si 1.86809 * 119.99519 * 342.51971 * 16 14 13 19 19 H 1.48496 * 109.46871 * 93.85323 * 18 16 14 20 20 H 1.48501 * 109.46741 * 213.85217 * 18 16 14 21 21 H 1.48492 * 109.47000 * 333.85026 * 18 16 14 22 22 H 1.08997 * 109.46978 * 299.99915 * 1 2 3 23 23 H 1.09003 * 109.47286 * 60.00299 * 1 2 3 24 24 H 1.08998 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47249 * 239.99455 * 2 1 3 26 26 H 1.08997 * 109.47634 * 184.47759 * 3 2 1 27 27 H 1.09003 * 109.47127 * 304.47927 * 3 2 1 28 28 H 1.08999 * 109.46914 * 64.47666 * 3 2 1 29 29 H 1.09001 * 109.46822 * 306.82913 * 4 2 1 30 30 H 1.09002 * 109.46681 * 186.83717 * 4 2 1 31 31 H 0.96708 * 113.99969 * 59.99319 * 7 5 4 32 32 H 1.07997 * 119.87517 * 359.97438 * 9 8 5 33 33 H 1.08003 * 119.75159 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.87229 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.13248 * 180.28112 * 12 11 10 36 36 H 0.97003 * 119.99878 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6749 -2.2048 1.1663 6 1 0.5974 -2.3073 1.0380 7 8 2.3458 -2.7991 0.0533 8 6 2.0976 -2.8978 2.4360 9 6 3.3139 -3.5387 2.5013 10 6 3.7049 -4.1774 3.6677 11 6 2.8781 -4.1782 4.7808 12 6 1.6604 -3.5389 4.7402 13 6 1.2506 -2.8919 3.5595 14 6 -0.0008 -2.2359 3.5044 15 1 -0.1383 -1.3894 2.8481 16 6 -1.0595 -2.6800 4.3047 17 7 -2.0872 -1.9002 4.5218 18 14 -1.0050 -4.3863 5.0631 19 1 -0.4396 -4.3010 6.4336 20 1 -2.3801 -4.9430 5.1287 21 1 -0.1519 -5.2712 4.2299 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1271 1.4435 -0.0802 27 1 1.6127 1.9789 -0.8472 28 1 1.7437 1.9325 0.9274 29 1 1.5802 -0.2829 2.1350 30 1 3.1231 -0.6166 1.3125 31 1 3.3102 -2.7446 0.1006 32 1 3.9657 -3.5447 1.6402 33 1 4.6609 -4.6781 3.7099 34 1 3.1928 -4.6794 5.6843 35 1 1.0199 -3.5369 5.6097 36 1 -2.8208 -2.2079 5.0768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260642958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:09 Heat of formation + Delta-G solvation = -60.357347 kcal Electronic energy + Delta-G solvation = -16861.195518 eV Core-core repulsion = 14308.831748 eV Total energy + Delta-G solvation = -2552.363770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74774 -36.65395 -34.71669 -33.61597 -30.93170 -30.08758 -27.68063 -26.76904 -25.16429 -23.05279 -21.23765 -19.74962 -19.56616 -17.46782 -16.42065 -15.39315 -15.23135 -14.58795 -14.05332 -13.93646 -13.51183 -13.22037 -13.05138 -12.58999 -12.13975 -11.99783 -11.85806 -11.72160 -11.27581 -10.98639 -10.90325 -10.81933 -10.62996 -10.33566 -10.18032 -10.15912 -9.76164 -9.67694 -9.20192 -8.98617 -7.66387 -7.53974 -6.98032 -4.52846 2.54619 2.65329 3.09599 3.20178 3.31527 3.96209 4.46215 5.08397 5.25857 5.34268 5.34632 5.44625 5.86401 5.91016 5.94963 5.96971 6.06083 6.14684 6.20459 6.21664 6.29593 6.40710 6.49507 6.59432 6.63953 6.71039 6.86371 6.89190 6.98060 7.15235 7.38890 7.62865 7.70360 7.83614 8.07532 8.28453 8.32517 8.62320 8.77683 10.03181 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.010488 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.448774 B = 2669.134492 C = 3601.851212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.137 4.137 5 C 0.164 3.836 6 H 0.108 0.892 7 O -0.567 6.567 8 C -0.212 4.212 9 C -0.074 4.074 10 C -0.244 4.244 11 C -0.080 4.080 12 C -0.239 4.239 13 C 0.101 3.899 14 C -0.447 4.447 15 H 0.097 0.903 16 C 0.086 3.914 17 N -0.805 5.805 18 Si 0.911 3.089 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.245 1.245 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.361 0.639 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 1.579 -4.482 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.175 4.175 5 C 0.106 3.894 6 H 0.126 0.874 7 O -0.372 6.372 8 C -0.214 4.214 9 C -0.092 4.092 10 C -0.263 4.263 11 C -0.098 4.098 12 C -0.259 4.259 13 C 0.097 3.903 14 C -0.475 4.475 15 H 0.114 0.886 16 C -0.134 4.134 17 N -0.429 5.429 18 Si 0.738 3.262 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.168 1.168 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.207 0.793 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.240 1.571 -4.588 6.442 hybrid contribution 0.465 -0.566 0.867 1.135 sum 4.706 1.005 -3.721 6.083 Atomic orbital electron populations 1.21863 0.95259 1.02274 1.01036 1.21064 0.96034 0.95223 0.98863 1.21844 1.00305 0.96764 1.01343 1.22298 1.00340 0.96555 0.98265 1.20606 0.97107 0.89122 0.82521 0.87406 1.86554 1.22504 1.82218 1.45933 1.20235 0.97460 1.07833 0.95828 1.20321 0.95218 0.97442 0.96224 1.20342 1.00650 1.10254 0.95086 1.20603 0.94628 0.97842 0.96775 1.21049 0.97900 1.08811 0.98094 1.17489 0.93021 0.89880 0.89865 1.19541 0.93692 1.13831 1.20431 0.88558 1.26152 0.94743 0.99283 0.93184 1.69680 1.07575 1.36247 1.29375 0.86340 0.76818 0.82879 0.80143 1.19809 1.21996 1.16804 0.92503 0.93669 0.92097 0.91144 0.93281 0.93277 0.92821 0.90391 0.92719 0.79251 0.88942 0.89013 0.89022 0.88204 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.98 37.16 0.33 -2.02 16 2 C -0.09 -1.44 2.86 -90.62 -0.26 -1.70 16 3 C -0.15 -1.93 9.19 37.15 0.34 -1.59 16 4 C -0.14 -2.41 4.20 -26.73 -0.11 -2.52 16 5 C 0.16 3.27 2.43 -27.88 -0.07 3.20 16 6 H 0.11 2.37 5.44 -51.93 -0.28 2.08 16 7 O -0.57 -10.35 12.36 -35.23 -0.44 -10.79 16 8 C -0.21 -4.74 5.12 -103.91 -0.53 -5.28 16 9 C -0.07 -1.53 9.29 -39.66 -0.37 -1.90 16 10 C -0.24 -5.08 10.05 -39.29 -0.39 -5.48 16 11 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 12 C -0.24 -5.78 7.16 -38.88 -0.28 -6.06 16 13 C 0.10 2.49 5.15 -106.82 -0.55 1.94 16 14 C -0.45 -11.55 8.57 -37.74 -0.32 -11.88 16 15 H 0.10 2.54 6.37 -52.49 -0.33 2.21 16 16 C 0.09 2.20 5.42 -17.34 -0.09 2.10 16 17 N -0.80 -20.91 13.93 55.55 0.77 -20.13 16 18 Si 0.91 20.87 24.47 -169.99 -4.16 16.71 16 19 H -0.27 -6.06 6.63 56.52 0.37 -5.69 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.24 -5.83 6.85 56.52 0.39 -5.45 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 25 H 0.07 1.08 7.60 -51.93 -0.39 0.69 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.53 7.31 -51.93 -0.38 1.15 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.36 5.38 7.33 45.56 0.33 5.71 16 32 H 0.09 1.62 6.40 -52.49 -0.34 1.28 16 33 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.10 2.41 4.46 -52.49 -0.23 2.18 16 36 H 0.29 6.76 8.30 -40.82 -0.34 6.43 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -26.81 284.52 -6.76 -33.57 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.53 Total: 9.68 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -2.70 Total: -33.33 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.77 Total: -20.13 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.44 Total: -10.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.16 Total: 16.71 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.81 -6.76 -33.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.786 kcal (2) G-P(sol) polarization free energy of solvation -26.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds