Wall clock time and date at job start Mon Mar 30 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47568 * 2 1 4 4 C 1.53005 * 109.46866 * 120.00262 * 2 1 3 5 5 C 1.52998 * 109.47186 * 66.83356 * 4 2 1 6 6 H 1.08998 * 109.47489 * 303.64545 * 5 4 2 7 7 O 1.42900 * 109.47443 * 63.64964 * 5 4 2 8 8 C 1.50698 * 109.46906 * 183.64738 * 5 4 2 9 9 C 1.37642 * 120.12947 * 265.02221 * 8 5 4 10 10 C 1.38609 * 120.24858 * 180.02562 * 9 8 5 11 11 C 1.38661 * 120.50286 * 359.97438 * 10 9 8 12 12 C 1.37590 * 120.24799 * 359.73685 * 11 10 9 13 13 C 1.40698 * 120.13183 * 84.99983 * 8 5 4 14 14 C 1.41400 * 120.23775 * 359.97438 * 13 8 5 15 15 H 1.07994 * 120.00374 * 331.44396 * 14 13 8 16 16 C 1.39952 * 120.00048 * 151.71565 * 14 13 8 17 17 N 1.30817 * 120.00173 * 162.51517 * 16 14 13 18 18 Si 1.86809 * 119.99519 * 342.51971 * 16 14 13 19 19 H 1.48496 * 109.46871 * 93.85323 * 18 16 14 20 20 H 1.48501 * 109.46741 * 213.85217 * 18 16 14 21 21 H 1.48492 * 109.47000 * 333.85026 * 18 16 14 22 22 H 1.08997 * 109.46978 * 299.99915 * 1 2 3 23 23 H 1.09003 * 109.47286 * 60.00299 * 1 2 3 24 24 H 1.08998 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47249 * 239.99455 * 2 1 3 26 26 H 1.08997 * 109.47634 * 184.47759 * 3 2 1 27 27 H 1.09003 * 109.47127 * 304.47927 * 3 2 1 28 28 H 1.08999 * 109.46914 * 64.47666 * 3 2 1 29 29 H 1.09001 * 109.46822 * 306.82913 * 4 2 1 30 30 H 1.09002 * 109.46681 * 186.83717 * 4 2 1 31 31 H 0.96708 * 113.99969 * 59.99319 * 7 5 4 32 32 H 1.07997 * 119.87517 * 359.97438 * 9 8 5 33 33 H 1.08003 * 119.75159 * 179.97438 * 10 9 8 34 34 H 1.08004 * 119.87229 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.13248 * 180.28112 * 12 11 10 36 36 H 0.97003 * 119.99878 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6749 -2.2048 1.1663 6 1 0.5974 -2.3073 1.0380 7 8 2.3458 -2.7991 0.0533 8 6 2.0976 -2.8978 2.4360 9 6 3.3139 -3.5387 2.5013 10 6 3.7049 -4.1774 3.6677 11 6 2.8781 -4.1782 4.7808 12 6 1.6604 -3.5389 4.7402 13 6 1.2506 -2.8919 3.5595 14 6 -0.0008 -2.2359 3.5044 15 1 -0.1383 -1.3894 2.8481 16 6 -1.0595 -2.6800 4.3047 17 7 -2.0872 -1.9002 4.5218 18 14 -1.0050 -4.3863 5.0631 19 1 -0.4396 -4.3010 6.4336 20 1 -2.3801 -4.9430 5.1287 21 1 -0.1519 -5.2712 4.2299 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1271 1.4435 -0.0802 27 1 1.6127 1.9789 -0.8472 28 1 1.7437 1.9325 0.9274 29 1 1.5802 -0.2829 2.1350 30 1 3.1231 -0.6166 1.3125 31 1 3.3102 -2.7446 0.1006 32 1 3.9657 -3.5447 1.6402 33 1 4.6609 -4.6781 3.7099 34 1 3.1928 -4.6794 5.6843 35 1 1.0199 -3.5369 5.6097 36 1 -2.8208 -2.2079 5.0768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:08 Heat of formation + Delta-G solvation = -76.331849 kcal Electronic energy + Delta-G solvation = -16861.888225 eV Core-core repulsion = 14308.831748 eV Total energy + Delta-G solvation = -2553.056477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39371 -38.21366 -36.10739 -35.45458 -32.64700 -31.81574 -29.17081 -28.01219 -26.97884 -24.59704 -23.02353 -21.43316 -20.89076 -19.31308 -18.07077 -17.05473 -16.76548 -16.20424 -15.62897 -15.56096 -14.95743 -14.77841 -14.64706 -14.28409 -13.82958 -13.55146 -13.38078 -13.01530 -12.72678 -12.63436 -12.58498 -12.43731 -12.10916 -11.91114 -11.72885 -11.59990 -11.43952 -11.25821 -11.00667 -10.58204 -9.44693 -9.28561 -8.88493 -6.45875 0.77951 0.87174 1.23902 1.37867 1.46028 2.10260 2.62273 3.46326 3.71556 3.91884 4.06477 4.10589 4.31768 4.35590 4.47251 4.52135 4.68105 4.77380 4.83139 4.86372 4.94264 5.01787 5.07675 5.11086 5.16172 5.23452 5.33306 5.35760 5.49849 5.59057 5.65346 5.86851 5.96159 6.04709 6.27589 6.44438 6.75021 6.88640 6.98086 8.18261 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.010488 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.448774 B = 2669.134492 C = 3601.851212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.127 4.127 5 C 0.173 3.827 6 H 0.078 0.922 7 O -0.567 6.567 8 C -0.219 4.219 9 C -0.079 4.079 10 C -0.230 4.230 11 C -0.091 4.091 12 C -0.260 4.260 13 C 0.076 3.924 14 C -0.472 4.472 15 H 0.073 0.927 16 C 0.050 3.950 17 N -0.844 5.844 18 Si 0.959 3.041 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.260 1.260 22 H 0.038 0.962 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.379 0.621 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 0.758 -5.308 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.198 4.198 4 C -0.164 4.164 5 C 0.114 3.886 6 H 0.096 0.904 7 O -0.375 6.375 8 C -0.221 4.221 9 C -0.097 4.097 10 C -0.249 4.249 11 C -0.109 4.109 12 C -0.279 4.279 13 C 0.074 3.926 14 C -0.501 4.501 15 H 0.091 0.909 16 C -0.164 4.164 17 N -0.471 5.471 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.184 1.184 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.228 0.772 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.890 0.752 -5.411 8.793 hybrid contribution -0.132 -0.362 1.038 1.107 sum 6.758 0.390 -4.373 8.059 Atomic orbital electron populations 1.21844 0.96235 1.00941 1.01264 1.21037 0.95168 0.96644 0.97806 1.21802 1.01323 0.94993 1.01683 1.22164 1.01032 0.95010 0.98234 1.20324 0.95793 0.90383 0.82052 0.90382 1.86528 1.24087 1.82047 1.44818 1.20635 0.97880 1.07574 0.96002 1.20785 0.94891 0.96250 0.97793 1.20883 1.01476 1.08308 0.94222 1.20991 0.93787 0.97513 0.98601 1.21191 0.99171 1.09844 0.97738 1.17709 0.93126 0.90575 0.91202 1.19525 0.95041 1.14313 1.21252 0.90910 1.26705 0.94501 1.01606 0.93636 1.69709 1.08561 1.37547 1.31263 0.85601 0.76905 0.79511 0.79523 1.18887 1.20842 1.18377 0.94326 0.91306 0.94259 0.90262 0.91732 0.91537 0.93716 0.93371 0.91043 0.77173 0.85071 0.85313 0.86160 0.88956 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 8.98 71.98 0.65 -4.10 16 2 C -0.09 -2.62 2.86 -10.79 -0.03 -2.65 16 3 C -0.14 -3.45 9.19 71.98 0.66 -2.79 16 4 C -0.13 -4.42 4.20 30.60 0.13 -4.29 16 5 C 0.17 6.84 2.43 29.85 0.07 6.91 16 6 H 0.08 3.59 5.44 -2.39 -0.01 3.58 16 7 O -0.57 -19.44 12.36 -148.98 -1.84 -21.28 16 8 C -0.22 -9.64 5.12 -19.40 -0.10 -9.73 16 9 C -0.08 -3.01 9.29 22.22 0.21 -2.80 16 10 C -0.23 -8.60 10.05 22.46 0.23 -8.38 16 11 C -0.09 -3.73 10.02 22.22 0.22 -3.51 16 12 C -0.26 -12.45 7.16 22.73 0.16 -12.29 16 13 C 0.08 3.84 5.15 -21.29 -0.11 3.73 16 14 C -0.47 -25.68 8.57 23.46 0.20 -25.48 16 15 H 0.07 4.16 6.37 -2.91 -0.02 4.14 16 16 C 0.05 2.70 5.42 85.26 0.46 3.16 16 17 N -0.84 -46.00 13.93 21.83 0.30 -45.70 16 18 Si 0.96 43.92 24.47 68.60 1.68 45.60 16 19 H -0.26 -11.50 6.63 99.48 0.66 -10.84 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -12.34 6.85 99.48 0.68 -11.66 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.42 6.55 -2.39 -0.02 1.41 16 25 H 0.08 2.25 7.60 -2.38 -0.02 2.23 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.97 7.31 -2.39 -0.02 1.95 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.38 9.81 7.33 -74.05 -0.54 9.27 16 32 H 0.13 3.91 6.40 -2.91 -0.02 3.89 16 33 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.09 4.47 4.46 -2.91 -0.01 4.46 16 36 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 Total: -1.00 -59.01 284.52 3.35 -55.66 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.46 Total: 27.93 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 2.75 Total: -62.22 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.30 Total: -45.70 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.84 Total: -21.28 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.60 kcal Total: -59.01 3.35 -55.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.669 kcal (2) G-P(sol) polarization free energy of solvation -59.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds