Wall clock time and date at job start Mon Mar 30 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46933 * 2 1 4 4 C 1.52999 * 109.47327 * 120.00131 * 2 1 3 5 5 C 1.52999 * 109.46943 * 65.00319 * 4 2 1 6 6 H 1.09001 * 109.46981 * 304.99814 * 5 4 2 7 7 O 1.42902 * 109.47322 * 64.99700 * 5 4 2 8 8 C 1.50694 * 109.47257 * 185.00415 * 5 4 2 9 9 C 1.38639 * 119.75455 * 99.99847 * 8 5 4 10 10 C 1.37616 * 120.24706 * 180.02562 * 9 8 5 11 11 C 1.40711 * 119.74696 * 0.27455 * 10 9 8 12 12 C 1.41404 * 120.24129 * 179.70362 * 11 10 9 13 13 H 1.07992 * 120.00276 * 24.26322 * 12 11 10 14 14 C 1.39947 * 119.99508 * 204.26753 * 12 11 10 15 15 N 1.30821 * 120.00278 * 17.71502 * 14 12 11 16 16 Si 1.86794 * 119.99656 * 197.70800 * 14 12 11 17 17 H 1.48496 * 109.47373 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47179 * 120.00490 * 16 14 12 19 19 H 1.48503 * 109.47456 * 240.00064 * 16 14 12 20 20 C 1.40712 * 119.51218 * 359.43126 * 11 10 9 21 21 C 1.37620 * 119.74136 * 0.58873 * 20 11 10 22 22 H 1.08993 * 109.47614 * 299.99756 * 1 2 3 23 23 H 1.09006 * 109.47107 * 59.99815 * 1 2 3 24 24 H 1.09002 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 240.00384 * 2 1 3 26 26 H 1.09000 * 109.47014 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47638 * 300.00666 * 3 2 1 28 28 H 1.09006 * 109.46555 * 60.00322 * 3 2 1 29 29 H 1.08997 * 109.47108 * 305.00663 * 4 2 1 30 30 H 1.09002 * 109.47188 * 185.00254 * 4 2 1 31 31 H 0.96700 * 113.99357 * 60.00617 * 7 5 4 32 32 H 1.07997 * 119.87294 * 359.97438 * 9 8 5 33 33 H 1.08009 * 120.12270 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00115 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.12815 * 180.30168 * 20 11 10 36 36 H 1.08000 * 119.86877 * 179.70299 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 1 0.5564 -2.2707 1.0526 7 8 2.2981 -2.8261 0.0900 8 6 2.0294 -2.8785 2.4720 9 6 1.0761 -3.1002 3.4540 10 6 1.4249 -3.7225 4.6308 11 6 2.7560 -4.1290 4.8377 12 6 3.1272 -4.7637 6.0456 13 1 2.3854 -5.2864 6.6311 14 6 4.4559 -4.7145 6.4822 15 7 5.2736 -3.8200 5.9895 16 14 5.0618 -5.9258 7.7685 17 1 3.9498 -6.8283 8.1612 18 1 6.1759 -6.7300 7.2053 19 1 5.5415 -5.1827 8.9614 20 6 3.7137 -3.9044 3.8316 21 6 3.3425 -3.2799 2.6628 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6765 1.9565 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6053 -0.2619 2.1369 30 1 3.1264 -0.6443 1.2951 31 1 3.2631 -2.7972 0.1442 32 1 0.0562 -2.7826 3.2950 33 1 0.6805 -3.8946 5.3943 34 1 6.1945 -3.7856 6.2924 35 1 4.7372 -4.2168 3.9779 36 1 4.0769 -3.1022 1.8912 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:15 Heat of formation + Delta-G solvation = -79.319406 kcal Electronic energy + Delta-G solvation = -16191.545582 eV Core-core repulsion = 13638.359556 eV Total energy + Delta-G solvation = -2553.186027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15956 -38.29196 -36.09311 -35.41209 -32.19959 -31.22146 -29.63406 -27.98553 -27.00631 -24.14956 -22.95532 -21.58471 -20.84270 -19.25610 -17.84713 -17.05497 -16.55795 -16.19526 -15.71345 -15.30434 -14.82441 -14.69180 -14.47641 -13.91529 -13.69795 -13.44819 -13.32058 -12.99924 -12.80729 -12.74182 -12.52760 -12.47700 -12.09724 -11.86940 -11.69599 -11.48506 -11.36303 -11.23841 -11.03950 -10.59979 -9.38093 -9.20914 -8.65900 -6.35187 0.92452 1.11974 1.37063 1.48333 1.52373 2.19715 2.68519 3.58734 3.79607 3.91113 4.05618 4.10875 4.37009 4.39248 4.48152 4.58871 4.68593 4.84147 4.87903 4.95602 5.01374 5.06186 5.12799 5.15301 5.18553 5.33990 5.37476 5.44500 5.52786 5.58603 5.68990 5.94553 6.08554 6.18647 6.37186 6.68152 6.87689 6.92683 7.01714 8.31468 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.046965 B = 0.005271 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.048332 B = 5310.602467 C = 5446.624846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.132 4.132 5 C 0.173 3.827 6 H 0.097 0.903 7 O -0.571 6.571 8 C -0.234 4.234 9 C -0.088 4.088 10 C -0.244 4.244 11 C 0.077 3.923 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.825 5.825 16 Si 0.982 3.018 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.264 1.264 20 C -0.190 4.190 21 C -0.095 4.095 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.378 0.622 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.288 0.712 35 H 0.101 0.899 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 5.954 -7.863 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.170 4.170 5 C 0.114 3.886 6 H 0.115 0.885 7 O -0.378 6.378 8 C -0.236 4.236 9 C -0.106 4.106 10 C -0.263 4.263 11 C 0.075 3.925 12 C -0.533 4.533 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.452 5.452 16 Si 0.802 3.198 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.189 1.189 20 C -0.209 4.209 21 C -0.113 4.113 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.434 5.955 -8.031 10.571 hybrid contribution 1.006 -0.427 1.162 1.595 sum -2.428 5.528 -6.869 9.146 Atomic orbital electron populations 1.21884 0.94946 1.01643 1.02043 1.21045 0.96281 0.96151 0.97486 1.21828 1.00864 0.95441 1.02027 1.22264 1.00927 0.95163 0.98624 1.20523 0.96426 0.89813 0.81815 0.88527 1.86464 1.24252 1.81053 1.46065 1.20170 0.94026 1.10433 0.98954 1.20686 0.98199 0.98207 0.93475 1.21177 0.96764 1.09103 0.99306 1.17999 0.92016 0.89602 0.92913 1.19871 0.95242 1.31718 1.06424 0.90883 1.26741 0.96158 0.95854 0.99107 1.69872 1.06968 1.28883 1.39431 0.85171 0.78804 0.78368 0.77442 1.18305 1.18790 1.18921 1.21276 0.99638 1.06006 0.93983 1.20631 0.95411 0.98778 0.96468 0.92723 0.91635 0.93095 0.91084 0.92920 0.91573 0.92924 0.92039 0.92398 0.77325 0.86491 0.88632 0.90121 0.88148 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.95 71.98 0.64 -2.53 16 2 C -0.09 -2.13 2.87 -10.79 -0.03 -2.16 16 3 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 4 C -0.13 -3.80 4.34 30.59 0.13 -3.66 16 5 C 0.17 5.71 3.06 29.85 0.09 5.80 16 6 H 0.10 3.09 6.19 -2.39 -0.01 3.08 16 7 O -0.57 -18.51 12.64 -148.98 -1.88 -20.39 16 8 C -0.23 -9.78 5.00 -19.68 -0.10 -9.88 16 9 C -0.09 -3.84 9.64 22.22 0.21 -3.63 16 10 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 11 C 0.08 4.24 5.57 -21.29 -0.12 4.12 16 12 C -0.50 -27.76 9.06 23.46 0.21 -27.55 16 13 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 14 C 0.04 1.85 5.14 85.26 0.44 2.28 16 15 N -0.83 -43.53 10.96 21.83 0.24 -43.29 16 16 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 C -0.19 -10.05 8.70 22.73 0.20 -9.86 16 21 C -0.09 -4.28 9.29 22.22 0.21 -4.08 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.05 1.16 6.46 -2.39 -0.02 1.15 16 25 H 0.07 1.71 7.69 -2.39 -0.02 1.70 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.38 10.50 7.48 -74.06 -0.55 9.95 16 32 H 0.12 4.35 8.03 -2.91 -0.02 4.33 16 33 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 34 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 35 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 36 H 0.11 4.27 6.76 -2.91 -0.02 4.25 16 Total: -1.00 -59.55 295.15 3.67 -55.89 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.51 Total: 32.56 kcal Atomic # 6 Polarization: -68.17 SS G_CDS: 2.77 Total: -65.39 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.24 Total: -43.29 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.88 Total: -20.39 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -59.55 3.67 -55.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.433 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds