Wall clock time and date at job start Mon Mar 30 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 6 6 O 1.42907 * 109.47171 * 65.00112 * 4 2 1 7 7 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 8 8 C 1.38251 * 120.00256 * 264.73383 * 7 4 2 9 9 C 1.38212 * 119.99951 * 179.74168 * 8 7 4 10 10 C 1.38252 * 119.99865 * 0.52607 * 9 8 7 11 11 C 1.38213 * 120.00136 * 359.74180 * 10 9 8 12 12 C 1.38216 * 119.99514 * 84.99833 * 7 4 2 13 13 C 1.50696 * 120.00254 * 0.02562 * 12 7 4 14 14 C 1.50696 * 109.47168 * 84.99934 * 13 12 7 15 15 H 1.07998 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00378 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47136 * 89.99958 * 18 16 14 20 20 H 1.48498 * 109.47630 * 210.00100 * 18 16 14 21 21 H 1.48504 * 109.47377 * 330.00585 * 18 16 14 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 0.96707 * 113.99746 * 60.00107 * 6 4 2 30 30 H 1.08008 * 120.00197 * 359.97438 * 8 7 4 31 31 H 1.08005 * 120.00059 * 180.29620 * 9 8 7 32 32 H 1.08008 * 119.99839 * 179.77195 * 10 9 8 33 33 H 1.07996 * 119.99873 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47230 * 205.00124 * 13 12 7 35 35 H 1.09001 * 109.47131 * 324.99909 * 13 12 7 36 36 H 0.96997 * 120.00244 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6053 -1.7198 -1.2953 6 8 1.6619 0.0169 -2.4131 7 6 3.5419 -0.8294 -1.1891 8 6 4.3289 0.1147 -1.8220 9 6 5.7064 0.0184 -1.7622 10 6 6.2972 -1.0281 -1.0787 11 6 5.5103 -1.9750 -0.4506 12 6 4.1325 -1.8756 -0.5056 13 6 3.2745 -2.9083 0.1787 14 6 2.8787 -3.9705 -0.8142 15 1 3.2145 -3.9042 -1.8385 16 6 2.0880 -5.0271 -0.4151 17 7 1.6787 -5.1077 0.8322 18 14 1.5967 -6.3434 -1.6460 19 1 2.6129 -7.4264 -1.6446 20 1 0.2746 -6.9048 -1.2694 21 1 1.5124 -5.7457 -3.0028 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 2.0142 0.9171 -2.4395 30 1 3.8674 0.9296 -2.3600 31 1 6.3213 0.7586 -2.2527 32 1 7.3736 -1.1054 -1.0351 33 1 5.9718 -2.7927 0.0830 34 1 3.8358 -3.3644 0.9943 35 1 2.3790 -2.4310 0.5765 36 1 1.1227 -5.8512 1.1131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260667750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:57 Heat of formation + Delta-G solvation = -52.705310 kcal Electronic energy + Delta-G solvation = -16939.279301 eV Core-core repulsion = 14387.247348 eV Total energy + Delta-G solvation = -2552.031953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55643 -36.98378 -33.73724 -33.21563 -31.33876 -30.40377 -27.15439 -26.90656 -25.46442 -23.29273 -21.24515 -20.30547 -19.52490 -16.84093 -16.28944 -15.66675 -15.29647 -14.85013 -14.34898 -13.92160 -13.60028 -13.32325 -12.55638 -12.42903 -12.36888 -11.93649 -11.82089 -11.57938 -11.42747 -11.22602 -10.93881 -10.88343 -10.65310 -10.51267 -10.43351 -10.05854 -9.59090 -9.48851 -9.31017 -8.43808 -8.15390 -7.76156 -6.06880 -4.10684 1.97422 2.10496 3.30036 3.36623 3.42014 4.33745 4.49579 4.93630 5.14506 5.26561 5.27835 5.33261 5.43031 5.53943 5.59907 5.76899 5.91918 6.03696 6.11861 6.12956 6.20430 6.23359 6.37704 6.45615 6.62426 6.66588 6.69440 6.83052 7.02535 7.14130 7.23657 7.47327 7.70038 7.78789 7.89267 8.06701 8.28723 8.94929 9.53677 11.02504 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.009909 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.663909 B = 2825.064963 C = 3597.114823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.149 3.851 5 H 0.132 0.868 6 O -0.558 6.558 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.149 4.149 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.028 4.028 13 C 0.044 3.956 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.359 0.641 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.027 0.973 35 H 0.035 0.965 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 11.309 -1.834 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.140 4.140 3 C -0.209 4.209 4 C 0.091 3.909 5 H 0.149 0.851 6 O -0.363 6.363 7 C -0.115 4.115 8 C -0.135 4.135 9 C -0.167 4.167 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.028 4.028 13 C 0.007 3.993 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.207 0.793 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.201 10.644 -1.852 11.026 hybrid contribution 0.194 -0.341 -0.440 0.589 sum 2.395 10.304 -2.292 10.824 Atomic orbital electron populations 1.21746 0.94802 1.02345 1.00932 1.21723 0.96408 0.96183 0.99677 1.21886 1.01423 0.96365 1.01246 1.21061 0.89765 0.96620 0.83497 0.85059 1.86644 1.76649 1.29079 1.43938 1.20333 0.96260 0.95626 0.99278 1.20704 0.93664 0.98849 1.00257 1.20811 0.94555 0.99255 1.02048 1.21021 0.98967 0.95486 0.98874 1.21088 0.93706 0.98775 1.00753 1.20497 0.94162 0.93888 0.94281 1.18435 0.94051 0.91345 0.95456 1.21011 1.31297 1.06668 0.95981 0.92475 1.24981 0.95874 0.97958 0.95255 1.69949 1.35762 1.31468 1.15861 0.86579 0.77886 0.81861 0.81719 1.20625 1.21129 1.19675 0.92586 0.92096 0.93346 0.89787 0.92787 0.92237 0.93033 0.79323 0.87339 0.87281 0.87197 0.86487 0.95458 0.94729 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.09 37.16 0.34 -1.82 16 2 C -0.12 -1.98 2.52 -90.62 -0.23 -2.21 16 3 C -0.15 -2.02 8.42 37.16 0.31 -1.71 16 4 C 0.15 2.79 2.29 -27.88 -0.06 2.72 16 5 H 0.13 2.97 6.42 -51.93 -0.33 2.63 16 6 O -0.56 -9.60 12.42 -35.23 -0.44 -10.04 16 7 C -0.11 -2.20 4.49 -104.62 -0.47 -2.67 16 8 C -0.12 -1.94 8.00 -39.59 -0.32 -2.25 16 9 C -0.15 -2.35 10.05 -39.59 -0.40 -2.74 16 10 C -0.13 -2.09 10.05 -39.59 -0.40 -2.49 16 11 C -0.13 -2.44 9.68 -39.58 -0.38 -2.82 16 12 C -0.03 -0.60 5.07 -104.63 -0.53 -1.13 16 13 C 0.04 1.09 4.43 -29.04 -0.13 0.96 16 14 C -0.51 -14.02 8.30 -34.44 -0.29 -14.30 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.81 7.82 -51.93 -0.41 0.41 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.82 6.53 -51.93 -0.34 0.48 16 28 H 0.05 0.60 6.72 -51.93 -0.35 0.25 16 29 H 0.36 4.84 5.47 45.56 0.25 5.09 16 30 H 0.11 1.50 6.40 -52.48 -0.34 1.17 16 31 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.03 0.88 5.68 -51.93 -0.30 0.59 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -29.14 289.06 -7.68 -36.81 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.66 Total: 6.20 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -2.65 Total: -28.87 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.44 Total: -10.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.14 -7.68 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260667750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.891 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds