Wall clock time and date at job start Mon Mar 30 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46973 * 2 1 4 4 C 1.52998 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47422 * 305.00323 * 4 3 2 6 6 O 1.42906 * 109.46840 * 65.00090 * 4 3 2 7 7 C 1.50691 * 109.47390 * 184.99906 * 4 3 2 8 8 C 1.38254 * 120.00360 * 280.02472 * 7 4 3 9 9 C 1.38216 * 120.00528 * 179.97438 * 8 7 4 10 10 C 1.38261 * 119.99683 * 359.75182 * 9 8 7 11 11 C 1.38212 * 119.99716 * 0.50410 * 10 9 8 12 12 C 1.50700 * 119.99804 * 179.77075 * 11 10 9 13 13 C 1.50706 * 109.47062 * 269.72032 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.38215 * 120.00217 * 99.99886 * 7 4 3 22 22 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47354 * 299.99998 * 1 2 3 24 24 H 1.09010 * 109.47029 * 60.00059 * 1 2 3 25 25 H 1.09001 * 109.47354 * 240.00002 * 2 1 3 26 26 H 1.09003 * 109.47274 * 119.99628 * 2 1 3 27 27 H 1.09001 * 109.47079 * 59.99833 * 3 2 1 28 28 H 1.08992 * 109.47312 * 299.99782 * 3 2 1 29 29 H 0.96699 * 113.99980 * 59.99898 * 6 4 3 30 30 H 1.08002 * 119.99952 * 0.02562 * 8 7 4 31 31 H 1.07998 * 120.00339 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.00049 * 180.27351 * 10 9 8 33 33 H 1.09004 * 109.47406 * 149.72738 * 12 11 10 34 34 H 1.08993 * 109.47274 * 29.72364 * 12 11 10 35 35 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 36 36 H 1.08009 * 119.99624 * 0.02562 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0468 0.8731 -1.2202 7 6 4.0722 2.8580 0.1244 8 6 4.1067 3.6791 -0.9873 9 6 4.5669 4.9774 -0.8737 10 6 4.9880 5.4567 0.3529 11 6 4.9585 4.6342 1.4633 12 6 5.4224 5.1549 2.7992 13 6 6.8966 4.8857 2.9589 14 1 7.4429 4.3877 2.1716 15 6 7.5480 5.2760 4.1097 16 7 6.8840 5.8881 5.0658 17 14 9.3754 4.9429 4.3074 18 1 9.5703 3.6183 4.9498 19 1 10.0264 4.9464 2.9727 20 1 9.9821 5.9991 5.1568 21 6 4.4980 3.3355 1.3496 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.7617 1.3474 -2.0132 30 1 3.7732 3.3062 -1.9445 31 1 4.5934 5.6189 -1.7421 32 1 5.3434 6.4725 0.4426 33 1 4.8730 4.6528 3.5956 34 1 5.2411 6.2283 2.8536 35 1 5.9351 6.0613 4.9631 36 1 4.4711 2.6941 2.2182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260673147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:04 Heat of formation + Delta-G solvation = -63.968533 kcal Electronic energy + Delta-G solvation = -15928.352275 eV Core-core repulsion = 13375.831912 eV Total energy + Delta-G solvation = -2552.520363 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41217 -37.21703 -34.21224 -33.74311 -31.37996 -31.00023 -28.11262 -26.66497 -23.99004 -23.17212 -21.56455 -21.29214 -19.87970 -17.14816 -16.53993 -15.94511 -15.61778 -14.88830 -14.64109 -13.79834 -13.69381 -13.57323 -13.46864 -13.15405 -12.49892 -12.04888 -11.97826 -11.86354 -11.44421 -11.38386 -11.19788 -11.08751 -10.74528 -10.69345 -10.54448 -10.16542 -10.00254 -9.67829 -8.97941 -8.39609 -8.27403 -7.84915 -6.40623 -4.11946 1.84927 1.99476 3.42801 3.46114 3.62339 4.22146 4.51014 4.58530 4.65280 4.90125 4.96896 5.18839 5.21381 5.34667 5.40422 5.45287 5.52045 5.68177 5.73672 5.79571 5.88375 5.96319 6.03702 6.09807 6.23759 6.28740 6.45304 6.60993 6.94050 6.97461 7.05960 7.14372 7.57875 7.61183 7.64939 8.09668 8.41439 8.81375 9.59077 10.98427 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.005306 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.679485 B = 5275.643502 C = 5505.495833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.145 4.145 4 C 0.150 3.850 5 H 0.104 0.896 6 O -0.557 6.557 7 C -0.121 4.121 8 C -0.141 4.141 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.026 4.026 12 C 0.034 3.966 13 C -0.592 4.592 14 H 0.051 0.949 15 C 0.017 3.983 16 N -0.911 5.911 17 Si 1.073 2.927 18 H -0.287 1.287 19 H -0.288 1.288 20 H -0.283 1.283 21 C -0.114 4.114 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.369 0.631 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.269 0.731 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.148 -7.608 -11.558 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.091 3.909 5 H 0.122 0.878 6 O -0.362 6.362 7 C -0.121 4.121 8 C -0.160 4.160 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.026 4.026 12 C -0.003 4.003 13 C -0.631 4.631 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.548 5.548 17 Si 0.901 3.099 18 H -0.213 1.213 19 H -0.214 1.214 20 H -0.209 1.209 21 C -0.132 4.132 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.217 0.783 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.598 -7.839 -10.111 15.414 hybrid contribution -1.522 0.330 -1.408 2.099 sum -10.120 -7.508 -11.519 17.072 Atomic orbital electron populations 1.21785 0.96097 1.01390 1.01700 1.21488 0.95393 0.96525 1.02521 1.22306 0.95517 0.97361 1.03063 1.20818 0.92151 0.90274 0.87632 0.87813 1.86594 1.77375 1.56660 1.15574 1.20373 1.01222 0.96129 0.94408 1.20524 1.03768 0.94416 0.97242 1.20980 0.99926 0.95548 0.97278 1.21090 1.00521 1.00185 0.92401 1.20448 0.91780 0.92930 0.97433 1.18489 0.97287 0.95903 0.88573 1.21922 0.92927 1.42719 1.05494 0.93059 1.25888 1.06586 0.93850 0.92346 1.70763 1.10981 1.38748 1.34261 0.83487 0.74174 0.76622 0.75654 1.21338 1.21396 1.20905 1.20863 0.99870 0.95997 0.96437 0.92888 0.92787 0.92943 0.91467 0.91984 0.90814 0.91679 0.78312 0.87440 0.86903 0.86511 0.96273 0.96236 0.92070 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.23 5.83 -26.73 -0.16 -1.38 16 3 C -0.14 -1.64 4.87 -26.73 -0.13 -1.77 16 4 C 0.15 2.05 3.21 -27.89 -0.09 1.96 16 5 H 0.10 1.48 8.00 -51.93 -0.42 1.06 16 6 O -0.56 -7.42 12.73 -35.23 -0.45 -7.87 16 7 C -0.12 -2.00 4.97 -104.63 -0.52 -2.52 16 8 C -0.14 -2.17 9.32 -39.58 -0.37 -2.54 16 9 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 10 C -0.12 -2.45 9.70 -39.58 -0.38 -2.83 16 11 C -0.03 -0.57 5.07 -104.63 -0.53 -1.10 16 12 C 0.03 0.88 4.42 -29.03 -0.13 0.75 16 13 C -0.59 -16.98 9.09 -34.44 -0.31 -17.29 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 16 N -0.91 -27.72 13.65 55.43 0.76 -26.96 16 17 Si 1.07 25.52 29.90 -169.99 -5.08 20.44 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.11 -2.24 9.33 -39.58 -0.37 -2.61 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.37 3.69 7.51 45.56 0.34 4.03 16 30 H 0.11 1.28 6.79 -52.49 -0.36 0.93 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.02 0.51 7.96 -51.93 -0.41 0.09 16 34 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 36 H 0.12 2.26 8.04 -52.48 -0.42 1.84 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -31.26 302.81 -8.29 -39.55 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.96 Total: 2.55 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -3.12 Total: -32.26 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.76 Total: -26.96 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.45 Total: -7.87 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.26 -8.29 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260673147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.422 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds