Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.35197 * 126.18976 * 2 1 4 4 H 0.96996 * 126.00832 * 359.93939 * 3 2 1 5 5 N 1.40317 * 107.99169 * 179.97438 * 3 2 1 6 6 C 1.30126 * 108.12754 * 359.95824 * 5 3 2 7 7 C 1.34571 * 126.19260 * 179.97438 * 2 1 3 8 8 C 1.50886 * 128.32791 * 0.16701 * 7 2 1 9 9 H 1.09000 * 109.71856 * 283.15495 * 8 7 2 10 10 C 1.50698 * 109.71821 * 43.76047 * 8 7 2 11 11 H 1.08000 * 120.00133 * 35.29133 * 10 8 7 12 12 C 1.37880 * 119.99999 * 215.29698 * 10 8 7 13 13 N 1.31512 * 120.00115 * 5.02907 * 12 10 8 14 14 Si 1.86805 * 119.99859 * 185.03076 * 12 10 8 15 15 H 1.48500 * 109.46746 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47058 * 59.99798 * 14 12 10 17 17 H 1.48499 * 109.46988 * 299.99908 * 14 12 10 18 18 C 1.53382 * 108.19429 * 163.43795 * 8 7 2 19 19 C 1.53006 * 109.42739 * 170.61713 * 18 8 7 20 20 C 1.53000 * 109.42972 * 290.45903 * 18 8 7 21 21 C 1.53030 * 109.72279 * 50.53914 * 18 8 7 22 22 C 1.50939 * 128.28923 * 180.30659 * 6 5 3 23 23 H 1.09003 * 109.46687 * 264.62397 * 1 2 3 24 24 H 1.08996 * 109.47154 * 24.62445 * 1 2 3 25 25 H 1.08997 * 109.47282 * 144.63041 * 1 2 3 26 26 H 0.97001 * 119.99695 * 354.80552 * 13 12 10 27 27 H 1.08993 * 109.47537 * 60.00003 * 19 18 8 28 28 H 1.09008 * 109.46970 * 180.02562 * 19 18 8 29 29 H 1.09000 * 109.46955 * 299.99316 * 19 18 8 30 30 H 1.09000 * 109.47181 * 60.00107 * 20 18 8 31 31 H 1.08997 * 109.47636 * 180.02562 * 20 18 8 32 32 H 1.09007 * 109.47319 * 300.00325 * 20 18 8 33 33 H 1.09002 * 109.42617 * 168.18640 * 21 18 8 34 34 H 1.08998 * 109.37815 * 48.32340 * 21 18 8 35 35 H 1.09002 * 109.72086 * 282.84127 * 22 6 5 36 36 H 1.09002 * 109.71898 * 43.44980 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3052 1.0911 0.0000 4 1 2.0087 2.0147 -0.0008 5 7 3.6382 0.6529 0.0006 6 6 3.6366 -0.6483 0.0018 7 6 2.3016 -1.0860 0.0005 8 6 1.8989 -2.5402 -0.0023 9 1 1.5733 -2.8335 0.9957 10 6 0.7781 -2.7555 -0.9864 11 1 0.7505 -2.1894 -1.9058 12 6 -0.2122 -3.6750 -0.7130 13 7 -0.2341 -4.2922 0.4481 14 14 -1.5228 -4.0443 -1.9920 15 1 -2.4637 -5.0610 -1.4571 16 1 -0.8789 -4.5660 -3.2242 17 1 -2.2672 -2.7997 -2.3114 18 6 3.1181 -3.3739 -0.4159 19 6 2.8148 -4.8586 -0.2041 20 6 3.4277 -3.1246 -1.8933 21 6 4.3280 -2.9755 0.4322 22 6 4.8202 -1.5851 0.0092 23 1 -0.3633 -0.0963 1.0232 24 1 -0.3633 0.9342 -0.4282 25 1 -0.3634 -0.8380 -0.5948 26 1 0.4871 -4.1576 1.0825 27 1 1.9559 -5.1443 -0.8113 28 1 3.6810 -5.4518 -0.4974 29 1 2.5918 -5.0374 0.8478 30 1 3.6417 -2.0668 -2.0462 31 1 4.2938 -3.7171 -2.1881 32 1 2.5680 -3.4125 -2.4984 33 1 5.1274 -3.7022 0.2873 34 1 4.0419 -2.9560 1.4838 35 1 5.2556 -1.6355 -0.9888 36 1 5.5670 -1.2285 0.7187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = 31.760720 kcal Electronic energy + Delta-G solvation = -17704.465019 eV Core-core repulsion = 15188.388539 eV Total energy + Delta-G solvation = -2516.076480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.40503 -39.05888 -35.35560 -33.41005 -32.34191 -30.92213 -28.60118 -27.94928 -27.09125 -25.17443 -24.23686 -21.23918 -20.56431 -19.06514 -18.15507 -17.59594 -16.17974 -15.78015 -15.59423 -15.36417 -15.02978 -14.54536 -14.25128 -13.93267 -13.51826 -13.39097 -13.03791 -12.84802 -12.69577 -12.51785 -12.36935 -12.31972 -11.99335 -11.84532 -11.60231 -11.41991 -11.21092 -10.87391 -10.27334 -10.18762 -10.02463 -8.99046 -8.26030 -5.97116 1.07214 1.60899 1.65757 1.83813 2.01981 2.10741 2.69316 3.42653 3.72480 3.96898 4.16667 4.25884 4.42853 4.50409 4.61581 4.68453 4.74215 4.82561 4.87276 5.02260 5.07774 5.13204 5.18528 5.21274 5.26293 5.31658 5.40225 5.49599 5.57138 5.76878 5.85502 5.92786 6.05845 6.39768 6.47766 6.63637 6.92087 6.96369 7.74093 9.06134 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.012587 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.703887 B = 2224.016022 C = 3003.210437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.081 3.919 3 N -0.487 5.487 4 H 0.443 0.557 5 N -0.325 5.325 6 C 0.064 3.936 7 C -0.222 4.222 8 C 0.110 3.890 9 H 0.006 0.994 10 C -0.552 4.552 11 H 0.035 0.965 12 C -0.014 4.014 13 N -0.940 5.940 14 Si 1.089 2.911 15 H -0.293 1.293 16 H -0.280 1.280 17 H -0.273 1.273 18 C -0.058 4.058 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.030 4.030 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.261 0.739 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 5.176 -1.815 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 N -0.199 5.199 4 H 0.288 0.712 5 N -0.148 5.148 6 C -0.104 4.104 7 C -0.233 4.233 8 C 0.090 3.910 9 H 0.024 0.976 10 C -0.590 4.590 11 H 0.053 0.947 12 C -0.213 4.213 13 N -0.579 5.579 14 Si 0.915 3.085 15 H -0.219 1.219 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.059 4.059 19 C -0.171 4.171 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.068 4.068 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.821 5.359 -2.080 7.502 hybrid contribution 0.407 0.655 0.458 0.897 sum 5.228 6.014 -1.622 8.132 Atomic orbital electron populations 1.20531 0.86522 1.04258 1.03145 1.20806 0.95217 0.87234 1.01185 1.46166 1.03104 1.08126 1.62497 0.71174 1.76710 0.97857 1.12722 1.27497 1.22738 0.96870 0.91497 0.99255 1.20545 0.91682 0.97797 1.13300 1.17401 0.92836 0.85839 0.94879 0.97601 1.21702 1.09776 1.22723 1.04808 0.94699 1.26513 1.01263 0.93859 0.99654 1.70890 1.34519 1.45122 1.07374 0.83277 0.74635 0.76726 0.73911 1.21950 1.20576 1.19868 1.20693 0.94890 0.94943 0.95339 1.21588 1.00121 0.95802 0.99599 1.21617 0.99808 0.99657 0.95797 1.21652 0.97890 0.95610 0.98808 1.20171 0.92080 0.91590 1.03008 0.91444 0.89972 0.89173 0.92693 0.94302 0.92582 0.95359 0.94369 0.92778 0.94133 0.89615 0.93572 0.89145 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 10.11 71.23 0.72 -2.39 16 2 C 0.08 3.24 7.09 41.20 0.29 3.53 16 3 N -0.49 -17.02 7.37 -48.29 -0.36 -17.38 16 4 H 0.44 11.81 8.96 -213.18 -1.91 9.90 16 5 N -0.32 -12.55 12.68 -47.14 -0.60 -13.14 16 6 C 0.06 2.53 6.28 43.44 0.27 2.80 16 7 C -0.22 -9.72 4.93 -20.10 -0.10 -9.82 16 8 C 0.11 5.18 1.70 -12.10 -0.02 5.16 16 9 H 0.01 0.33 6.13 -2.39 -0.01 0.31 16 10 C -0.55 -27.70 3.52 25.60 0.09 -27.61 16 11 H 0.03 1.82 7.65 -2.91 -0.02 1.79 16 12 C -0.01 -0.72 4.45 84.66 0.38 -0.34 16 13 N -0.94 -53.06 13.19 21.45 0.28 -52.78 16 14 Si 1.09 47.77 29.91 68.60 2.05 49.82 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 C -0.06 -2.35 0.55 -52.04 -0.03 -2.38 16 19 C -0.11 -4.71 7.45 71.98 0.54 -4.17 16 20 C -0.11 -4.30 7.25 71.98 0.52 -3.78 16 21 C -0.10 -3.44 4.85 30.75 0.15 -3.29 16 22 C -0.03 -0.96 5.67 30.07 0.17 -0.79 16 23 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.09 3.82 5.60 -2.39 -0.01 3.81 16 26 H 0.26 14.99 5.63 -92.71 -0.52 14.47 16 27 H 0.04 1.83 6.63 -2.39 -0.02 1.81 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.03 1.20 7.84 -2.39 -0.02 1.18 16 30 H 0.04 1.48 5.55 -2.39 -0.01 1.47 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.73 6.93 -2.38 -0.02 1.71 16 33 H 0.09 2.40 8.09 -2.39 -0.02 2.39 16 34 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.09 2.70 6.96 -2.39 -0.02 2.68 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -60.48 273.11 3.78 -56.69 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.58 Total: 19.86 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 2.98 Total: -43.07 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -0.67 Total: -83.30 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.05 Total: 49.82 kcal Total: -60.48 3.78 -56.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.455 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds