Wall clock time and date at job start Mon Mar 30 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47254 * 2 1 4 4 C 1.50697 * 109.46604 * 239.99954 * 2 1 3 5 5 C 1.34451 * 125.78862 * 239.71576 * 4 2 1 6 6 C 1.41504 * 106.80453 * 179.86018 * 5 4 2 7 7 C 1.34282 * 107.02253 * 0.41493 * 6 5 4 8 8 O 1.34198 * 125.78665 * 60.03048 * 4 2 1 9 9 C 1.51439 * 110.25350 * 179.71133 * 7 6 5 10 10 C 1.54456 * 104.99971 * 16.88514 * 9 7 6 11 11 H 1.09001 * 110.94730 * 92.61261 * 10 9 7 12 12 C 1.52998 * 110.95191 * 216.28694 * 10 9 7 13 13 C 1.51198 * 142.39424 * 180.02562 * 6 5 4 14 14 H 1.09000 * 110.35353 * 44.70995 * 13 6 5 15 15 C 1.50700 * 110.43607 * 282.48288 * 13 6 5 16 16 H 1.08011 * 119.99842 * 249.86900 * 15 13 6 17 17 C 1.37874 * 120.00589 * 69.87319 * 15 13 6 18 18 N 1.31520 * 119.99305 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00459 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46820 * 89.99972 * 19 17 15 21 21 H 1.48501 * 109.47172 * 209.99952 * 19 17 15 22 22 H 1.48500 * 109.47286 * 330.00105 * 19 17 15 23 23 H 1.09002 * 109.47559 * 59.99627 * 1 2 3 24 24 H 1.09000 * 109.47674 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46930 * 300.00113 * 1 2 3 26 26 H 1.09002 * 109.47034 * 120.00405 * 2 1 3 27 27 H 1.08999 * 109.46949 * 60.00121 * 3 2 1 28 28 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47430 * 300.00162 * 3 2 1 30 30 H 1.08004 * 126.59503 * 359.96874 * 5 4 2 31 31 H 1.09001 * 110.33906 * 135.76542 * 9 7 6 32 32 H 1.09006 * 110.33990 * 257.90353 * 9 7 6 33 33 H 1.09001 * 109.47289 * 50.36708 * 12 10 9 34 34 H 1.08997 * 109.47010 * 170.36144 * 12 10 9 35 35 H 1.08999 * 109.46857 * 290.36581 * 12 10 9 36 36 H 0.97003 * 119.99533 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 2.8128 -1.8051 -1.2428 6 6 3.0371 -2.1322 -2.6011 7 6 2.3898 -1.2154 -3.3384 8 8 1.7810 -0.3543 -2.4997 9 6 2.5882 -1.4938 -4.8137 10 6 3.0893 -2.9533 -4.8812 11 1 2.2573 -3.6453 -5.0120 12 6 4.1217 -3.1263 -5.9970 13 6 3.7421 -3.1297 -3.4923 14 1 3.5843 -4.1438 -3.1253 15 6 5.2158 -2.8225 -3.5631 16 1 5.6451 -2.4438 -4.4791 17 6 6.0161 -3.0249 -2.4588 18 7 5.4932 -3.4855 -1.3434 19 14 7.8429 -2.6448 -2.5469 20 1 8.0746 -1.2334 -2.1472 21 1 8.5811 -3.5473 -1.6273 22 1 8.3251 -2.8513 -3.9361 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1937 -2.3340 -0.3817 31 1 1.6440 -1.3924 -5.3487 32 1 3.3336 -0.8162 -5.2303 33 1 4.8884 -2.3569 -5.9051 34 1 4.5831 -4.1104 -5.9157 35 1 3.6292 -3.0346 -6.9650 36 1 6.0562 -3.6276 -0.5664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:57 Heat of formation + Delta-G solvation = -5.496650 kcal Electronic energy + Delta-G solvation = -16925.837201 eV Core-core repulsion = 14375.852370 eV Total energy + Delta-G solvation = -2549.984832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.35717 -38.76857 -36.28600 -34.35802 -33.01841 -30.49467 -29.17037 -28.04250 -26.31944 -25.65576 -22.64463 -21.85746 -20.80691 -19.68957 -18.09261 -17.14074 -16.88830 -16.42344 -15.90662 -15.50560 -15.28171 -14.32630 -14.30725 -14.03209 -13.66702 -13.58823 -13.13906 -13.01979 -12.84551 -12.70339 -12.42204 -12.24253 -12.14939 -12.10053 -12.01833 -11.79498 -11.61049 -11.07739 -10.93671 -10.48450 -9.99786 -8.74440 -8.05027 -6.15803 1.04998 1.38634 1.39858 1.48789 1.89407 2.10873 2.45444 3.25128 3.61641 3.96161 4.04439 4.20770 4.26029 4.31670 4.44178 4.57596 4.76738 4.77677 4.78633 4.84855 4.92482 4.96163 5.03988 5.09258 5.22628 5.27875 5.34181 5.36232 5.41953 5.53072 5.60750 5.64254 5.80337 5.90690 6.01362 6.36598 6.61260 6.94909 7.50342 9.01571 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.009600 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.792082 B = 2916.000653 C = 3735.914919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.140 4.140 4 C -0.028 4.028 5 C -0.197 4.197 6 C -0.147 4.147 7 C -0.114 4.114 8 O -0.174 6.174 9 C 0.007 3.993 10 C -0.083 4.083 11 H 0.075 0.925 12 C -0.117 4.117 13 C 0.094 3.906 14 H -0.006 1.006 15 C -0.516 4.516 16 H 0.078 0.922 17 C 0.011 3.989 18 N -0.910 5.910 19 Si 0.946 3.054 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.259 1.259 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 6.689 -1.377 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.078 4.078 5 C -0.216 4.216 6 C -0.149 4.149 7 C -0.163 4.163 8 O -0.073 6.073 9 C -0.030 4.030 10 C -0.102 4.102 11 H 0.093 0.907 12 C -0.174 4.174 13 C 0.075 3.925 14 H 0.012 0.988 15 C -0.554 4.554 16 H 0.096 0.904 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.773 3.227 20 H -0.212 1.212 21 H -0.213 1.213 22 H -0.183 1.183 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.863 6.864 -1.310 10.520 hybrid contribution 1.437 -0.350 0.735 1.652 sum -6.426 6.514 -0.575 9.168 Atomic orbital electron populations 1.21801 0.92238 1.02196 1.03230 1.19853 0.97451 0.96029 0.89321 1.21813 1.00529 0.94120 1.03279 1.22829 1.02841 0.97839 0.84255 1.21085 1.03382 0.99690 0.97463 1.21903 0.98163 1.01498 0.93340 1.23555 1.02786 0.93192 0.96746 1.83599 1.60600 1.47737 1.15326 1.20647 1.01729 0.96982 0.83673 1.21963 0.97908 0.94313 0.96009 0.90679 1.21611 0.97881 1.01782 0.96129 1.17915 0.93590 0.91615 0.89352 0.98793 1.21632 0.92507 1.43051 0.98215 0.90448 1.25789 1.02286 0.95264 0.95497 1.70149 1.36380 1.45977 1.02398 0.85730 0.81124 0.77410 0.78461 1.21201 1.21326 1.18331 0.92706 0.93098 0.88999 0.88265 0.88813 0.94014 0.92700 0.86266 0.89008 0.89937 0.92750 0.93282 0.91058 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.17 71.98 0.66 -2.70 16 2 C -0.01 -0.25 3.32 -11.54 -0.04 -0.29 16 3 C -0.14 -3.70 9.18 71.98 0.66 -3.04 16 4 C -0.03 -1.18 5.83 24.82 0.14 -1.03 16 5 C -0.20 -9.88 10.41 22.21 0.23 -9.65 16 6 C -0.15 -7.66 5.78 -19.80 -0.11 -7.77 16 7 C -0.11 -5.24 8.21 25.02 0.21 -5.03 16 8 O -0.17 -7.63 10.66 -5.84 -0.06 -7.69 16 9 C 0.01 0.25 6.34 30.58 0.19 0.44 16 10 C -0.08 -3.32 3.62 -9.80 -0.04 -3.36 16 11 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 12 C -0.12 -4.06 8.17 71.98 0.59 -3.47 16 13 C 0.09 4.88 2.60 -11.63 -0.03 4.85 16 14 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 15 C -0.52 -28.25 7.83 25.60 0.20 -28.05 16 16 H 0.08 4.00 5.20 -2.91 -0.02 3.99 16 17 C 0.01 0.61 5.37 84.65 0.45 1.07 16 18 N -0.91 -54.31 12.53 21.45 0.27 -54.04 16 19 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.10 2.87 8.10 -2.39 -0.02 2.85 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 6.32 8.04 -2.91 -0.02 6.30 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.08 2.96 7.80 -2.38 -0.02 2.94 16 33 H 0.05 2.00 5.97 -2.39 -0.01 1.98 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -66.55 292.85 6.40 -60.15 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.05 Total: 13.03 kcal Atomic # 6 Polarization: -61.15 SS G_CDS: 3.12 Total: -58.03 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.27 Total: -54.04 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.06 Total: -7.69 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.55 6.40 -60.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.656 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds