Wall clock time and date at job start Mon Mar 30 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 H 1.08994 * 109.47091 * 55.00063 * 3 2 1 5 5 C 1.53007 * 109.46976 * 294.99964 * 3 2 1 6 6 C 1.53000 * 109.47020 * 175.00654 * 3 2 1 7 7 H 1.08993 * 109.47335 * 58.71157 * 6 3 2 8 8 C 1.50703 * 109.47092 * 178.71828 * 6 3 2 9 9 H 1.07995 * 120.00056 * 55.01130 * 8 6 3 10 10 C 1.37874 * 119.99740 * 235.01142 * 8 6 3 11 11 N 1.31510 * 119.99831 * 173.87020 * 10 8 6 12 12 Si 1.86800 * 120.00134 * 353.87271 * 10 8 6 13 13 H 1.48504 * 109.47316 * 85.99744 * 12 10 8 14 14 H 1.48494 * 109.47251 * 205.99628 * 12 10 8 15 15 H 1.48499 * 109.47220 * 326.00098 * 12 10 8 16 16 C 1.50709 * 109.46904 * 298.71313 * 6 3 2 17 17 C 1.38259 * 119.94327 * 298.62376 * 16 6 3 18 18 C 1.38149 * 120.05504 * 179.72431 * 17 16 6 19 19 C 1.38729 * 119.93997 * 0.54529 * 18 17 16 20 20 O 1.35899 * 120.05579 * 179.74824 * 19 18 17 21 21 C 1.38735 * 119.89238 * 359.72647 * 19 18 17 22 22 C 1.38148 * 119.93967 * 359.97438 * 21 19 18 23 23 H 1.08995 * 109.46385 * 299.99588 * 1 2 3 24 24 H 1.08990 * 109.46989 * 59.99945 * 1 2 3 25 25 H 1.09000 * 109.46801 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46528 * 240.00156 * 2 1 3 27 27 H 1.08993 * 109.47248 * 120.00524 * 2 1 3 28 28 H 1.08994 * 109.47302 * 300.00534 * 5 3 2 29 29 H 1.09001 * 109.46998 * 60.00561 * 5 3 2 30 30 H 1.08997 * 109.46663 * 179.97438 * 5 3 2 31 31 H 0.97009 * 119.99733 * 179.97438 * 11 10 8 32 32 H 1.08007 * 119.97301 * 359.97438 * 17 16 6 33 33 H 1.08000 * 120.02935 * 180.26649 * 18 17 16 34 34 H 0.96703 * 114.00386 * 269.97883 * 20 19 18 35 35 H 1.08000 * 120.03026 * 179.97438 * 21 19 18 36 36 H 1.08003 * 119.96879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4443 0.1256 7 1 3.9984 0.8858 -0.7039 8 6 4.0698 2.8639 0.0939 9 1 3.6845 3.5898 0.7945 10 6 5.0237 3.2358 -0.8295 11 7 5.3766 4.4980 -0.9384 12 14 5.8147 1.9469 -1.9262 13 1 4.9694 1.7336 -3.1284 14 1 7.1615 2.4118 -2.3443 15 1 5.9417 0.6706 -1.1777 16 6 3.9624 0.7987 1.4281 17 6 3.5509 1.3520 2.6264 18 6 3.9092 0.7589 3.8216 19 6 4.6920 -0.3864 3.8188 20 8 5.0501 -0.9688 4.9933 21 6 5.1084 -0.9365 2.6152 22 6 4.7422 -0.3430 1.4226 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0698 1.5875 -2.1492 29 1 0.5489 2.1253 -1.3969 30 1 1.9982 3.1543 -1.3072 31 1 6.0480 4.7596 -1.5879 32 1 2.9455 2.2464 2.6281 33 1 3.5840 1.1891 4.7573 34 1 5.8830 -0.6394 5.3579 35 1 5.7182 -1.8278 2.6105 36 1 5.0657 -0.7711 0.4853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261022130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:34 Heat of formation + Delta-G solvation = -63.414210 kcal Electronic energy + Delta-G solvation = -16780.815023 eV Core-core repulsion = 14228.318697 eV Total energy + Delta-G solvation = -2552.496326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72962 -38.70436 -36.76035 -34.65486 -32.43204 -31.79785 -30.16542 -28.06209 -25.96327 -23.82177 -23.60121 -22.05926 -20.31181 -19.22380 -18.93509 -16.93455 -16.41836 -16.34595 -15.94954 -15.66106 -14.96257 -14.87011 -14.39912 -14.20499 -13.93503 -13.51293 -13.41398 -13.04283 -12.84216 -12.74300 -12.62603 -12.38638 -11.98941 -11.78027 -11.63124 -11.34310 -11.23096 -11.06694 -10.84828 -10.62241 -9.78985 -9.11669 -8.24900 -6.24093 0.51074 0.55361 1.33603 1.36337 1.44510 2.36240 2.85573 3.15213 3.45262 3.97555 4.16430 4.19124 4.22703 4.30126 4.46400 4.62811 4.66370 4.74075 4.87616 4.91435 4.96068 5.09642 5.14712 5.19201 5.24259 5.30542 5.37660 5.49980 5.56691 5.63179 5.64379 5.70399 5.82535 5.96401 6.07769 6.40259 6.79282 6.94709 7.38316 8.91650 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.010714 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.967842 B = 2612.885945 C = 3455.175427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.071 4.071 4 H 0.052 0.948 5 C -0.130 4.130 6 C 0.048 3.952 7 H 0.038 0.962 8 C -0.483 4.483 9 H 0.037 0.963 10 C 0.018 3.982 11 N -0.948 5.948 12 Si 0.923 3.077 13 H -0.265 1.265 14 H -0.295 1.295 15 H -0.244 1.244 16 C -0.055 4.055 17 C -0.106 4.106 18 C -0.147 4.147 19 C 0.076 3.924 20 O -0.506 6.506 21 C -0.143 4.143 22 C -0.132 4.132 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.404 0.596 35 H 0.142 0.858 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -11.332 4.973 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.187 4.187 6 C 0.029 3.971 7 H 0.056 0.944 8 C -0.521 4.521 9 H 0.055 0.945 10 C -0.179 4.179 11 N -0.589 5.589 12 Si 0.748 3.252 13 H -0.190 1.190 14 H -0.222 1.222 15 H -0.168 1.168 16 C -0.056 4.056 17 C -0.124 4.124 18 C -0.165 4.165 19 C 0.032 3.968 20 O -0.319 6.319 21 C -0.162 4.162 22 C -0.150 4.150 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.262 0.738 35 H 0.159 0.841 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.183 -11.524 4.807 13.169 hybrid contribution 1.214 0.533 -0.530 1.428 sum -2.969 -10.991 4.277 12.162 Atomic orbital electron populations 1.21772 0.94837 1.01792 1.01872 1.21593 0.96687 0.96029 1.01195 1.21127 0.94967 0.95376 0.97562 0.92922 1.21677 1.00092 1.00252 0.96705 1.18393 0.94028 0.93808 0.90891 0.94381 1.20990 1.21220 0.93939 1.15965 0.94506 1.25785 0.97139 0.96543 0.98463 1.70040 1.33494 1.17813 1.37506 0.86088 0.77897 0.81115 0.80060 1.19027 1.22181 1.16786 1.20510 0.95137 0.93151 0.96767 1.20850 1.00551 0.99214 0.91774 1.21511 1.00646 0.95733 0.98638 1.18357 0.99505 0.93386 0.85545 1.84743 1.46116 1.65364 1.35642 1.21479 1.01708 1.01383 0.91599 1.21095 0.99533 0.96218 0.98141 0.93066 0.92212 0.91919 0.92500 0.92851 0.94173 0.91746 0.94352 0.92843 0.86990 0.84509 0.73791 0.84054 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.67 71.98 0.70 -3.04 16 2 C -0.12 -3.69 5.26 30.60 0.16 -3.53 16 3 C -0.07 -2.72 1.82 -10.79 -0.02 -2.74 16 4 H 0.05 2.06 7.42 -2.39 -0.02 2.05 16 5 C -0.13 -4.92 8.68 71.98 0.63 -4.30 16 6 C 0.05 2.09 1.48 -12.28 -0.02 2.07 16 7 H 0.04 1.68 4.57 -2.39 -0.01 1.67 16 8 C -0.48 -25.96 7.10 25.60 0.18 -25.78 16 9 H 0.04 2.21 8.02 -2.91 -0.02 2.19 16 10 C 0.02 0.99 5.47 84.65 0.46 1.45 16 11 N -0.95 -57.90 13.96 21.45 0.30 -57.61 16 12 Si 0.92 43.09 26.95 68.60 1.85 44.94 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 15 H -0.24 -10.49 6.68 99.48 0.66 -9.82 16 16 C -0.06 -2.23 3.49 -19.85 -0.07 -2.29 16 17 C -0.11 -4.05 8.78 22.25 0.20 -3.85 16 18 C -0.15 -4.84 9.99 22.37 0.22 -4.61 16 19 C 0.08 2.36 6.70 22.51 0.15 2.51 16 20 O -0.51 -12.92 13.50 -92.41 -1.25 -14.17 16 21 C -0.14 -4.52 9.99 22.37 0.22 -4.29 16 22 C -0.13 -4.78 9.66 22.25 0.22 -4.56 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.46 6.56 -2.39 -0.02 1.45 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.72 7.09 -2.39 -0.02 1.71 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.02 6.57 -2.39 -0.02 2.01 16 30 H 0.04 1.69 7.18 -2.39 -0.02 1.67 16 31 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 32 H 0.11 4.43 7.58 -2.91 -0.02 4.41 16 33 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 34 H 0.40 6.36 9.06 -74.06 -0.67 5.69 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.12 4.16 7.83 -2.91 -0.02 4.14 16 Total: -1.00 -63.58 292.27 4.28 -59.30 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.35 Total: 20.51 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.03 Total: -52.97 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.30 Total: -57.61 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.25 Total: -14.17 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.85 Total: 44.94 kcal Total: -63.58 4.28 -59.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.113 kcal (2) G-P(sol) polarization free energy of solvation -63.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds