Wall clock time and date at job start Mon Mar 30 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 C 1.34766 * 125.76057 * 240.00240 * 12 2 1 14 14 C 1.40645 * 106.64159 * 180.02562 * 13 12 2 15 15 C 1.34891 * 107.15797 * 359.95996 * 14 13 12 16 16 O 1.33833 * 108.29961 * 359.79521 * 15 14 13 17 17 C 1.50924 * 123.89959 * 180.08374 * 15 14 13 18 18 C 1.53337 * 108.42794 * 16.71486 * 17 15 14 19 19 C 1.53117 * 109.53849 * 309.95822 * 18 17 15 20 20 H 1.08999 * 109.47917 * 310.00606 * 19 18 17 21 21 C 1.53001 * 109.48357 * 189.97357 * 19 18 17 22 22 C 1.50635 * 128.28426 * 179.87940 * 14 13 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.08001 * 126.67881 * 359.97438 * 13 12 2 28 28 H 1.09002 * 109.67432 * 256.98494 * 17 15 14 29 29 H 1.08997 * 109.70726 * 136.46754 * 17 15 14 30 30 H 1.09000 * 109.46167 * 189.93745 * 18 17 15 31 31 H 1.09000 * 109.45070 * 69.97017 * 18 17 15 32 32 H 1.08993 * 109.46857 * 300.05909 * 21 19 18 33 33 H 1.08998 * 109.46864 * 60.05597 * 21 19 18 34 34 H 1.08998 * 109.47287 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.68085 * 316.18635 * 22 14 13 36 36 H 1.09005 * 109.67986 * 76.73287 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2306 13 6 2.8103 -0.1703 2.1893 14 6 3.0367 -1.1807 3.1411 15 6 2.3854 -2.2822 2.7145 16 8 1.7753 -1.9891 1.5600 17 6 2.3751 -3.5952 3.4588 18 6 2.8343 -3.3394 4.8993 19 6 4.1355 -2.5323 4.8863 20 1 4.8484 -3.0029 4.2092 21 6 4.7238 -2.4898 6.2980 22 6 3.8444 -1.1034 4.4102 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 3.1874 0.8413 2.2202 28 1 3.0558 -4.2962 2.9757 29 1 1.3661 -4.0074 3.4631 30 1 3.0030 -4.2921 5.4012 31 1 2.0652 -2.7797 5.4315 32 1 4.0105 -2.0197 6.9748 33 1 4.9305 -3.5052 6.6361 34 1 5.6497 -1.9149 6.2886 35 1 4.7823 -0.5825 4.2172 36 1 3.2782 -0.5701 5.1738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:29 Heat of formation + Delta-G solvation = -35.337682 kcal Electronic energy + Delta-G solvation = -16479.499062 eV Core-core repulsion = 13928.220226 eV Total energy + Delta-G solvation = -2551.278836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.51154 -38.60424 -36.42029 -33.93731 -32.99067 -32.29524 -29.24561 -27.34511 -27.04288 -24.47839 -23.01023 -22.08983 -21.48239 -19.53205 -18.39823 -17.47167 -16.94642 -16.62627 -15.64712 -15.17964 -15.05168 -14.73130 -14.30614 -14.21409 -13.73304 -13.56077 -13.44013 -13.33557 -12.97634 -12.86308 -12.72519 -12.38859 -12.27894 -12.26378 -11.81353 -11.61937 -11.46102 -11.25080 -11.13667 -10.58280 -10.31462 -8.87509 -8.18149 -6.34528 0.98232 1.37911 1.39197 1.51654 1.79321 2.20421 2.39429 3.08498 3.75809 3.84880 3.91800 4.06223 4.30103 4.34391 4.55112 4.56417 4.60748 4.71991 4.80097 4.85840 4.92045 4.96138 5.00933 5.01597 5.06858 5.15443 5.23136 5.31539 5.38433 5.44224 5.54132 5.56636 5.67313 5.87332 5.91878 6.16401 6.53374 6.69880 7.33532 8.85965 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.042547 B = 0.005822 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.936352 B = 4808.280696 C = 4944.404587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.108 3.892 3 H 0.037 0.963 4 C -0.534 4.534 5 H 0.042 0.958 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.020 3.980 13 C -0.248 4.248 14 C -0.184 4.184 15 C -0.063 4.063 16 O -0.189 6.189 17 C -0.032 4.032 18 C -0.101 4.101 19 C -0.092 4.092 20 H 0.065 0.935 21 C -0.139 4.139 22 C -0.039 4.039 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -7.101 15.592 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.055 0.945 4 C -0.572 4.572 5 H 0.060 0.940 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.198 1.198 12 C -0.030 4.030 13 C -0.267 4.267 14 C -0.185 4.185 15 C -0.112 4.112 16 O -0.086 6.086 17 C -0.069 4.069 18 C -0.139 4.139 19 C -0.111 4.111 20 H 0.084 0.916 21 C -0.196 4.196 22 C -0.076 4.076 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.163 0.837 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.763 -7.187 15.308 17.569 hybrid contribution 0.149 0.221 -1.334 1.360 sum 4.912 -6.966 13.975 16.369 Atomic orbital electron populations 1.21615 0.96716 0.99219 1.00500 1.17451 0.93686 0.93449 0.86471 0.94461 1.21231 1.32093 1.12570 0.91300 0.93965 1.25691 0.94896 0.95647 1.01690 1.69970 1.36888 1.23657 1.24540 0.85460 0.78375 0.78573 0.78993 1.19919 1.19887 1.19799 1.23404 0.99842 0.81490 0.98277 1.21403 1.06723 1.01609 0.96972 1.20451 1.04799 0.92893 1.00355 1.23110 1.00630 0.99964 0.87513 1.83852 1.59723 1.29182 1.35883 1.20343 1.03409 0.88569 0.94620 1.21648 0.97134 1.01861 0.93208 1.21228 0.97233 0.94188 0.98420 0.91603 1.21770 1.00810 1.02767 0.94275 1.20182 0.97861 0.98273 0.91294 0.95612 0.90952 0.95137 0.92350 0.83727 0.89361 0.89517 0.87801 0.91403 0.92022 0.91122 0.92321 0.90949 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.36 8.95 71.98 0.64 -5.72 16 2 C 0.11 5.88 2.71 -12.29 -0.03 5.84 16 3 H 0.04 2.14 8.10 -2.39 -0.02 2.12 16 4 C -0.53 -31.28 8.55 25.60 0.22 -31.06 16 5 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.02 1.00 5.77 24.89 0.14 1.14 16 13 C -0.25 -10.78 10.77 22.06 0.24 -10.54 16 14 C -0.18 -6.77 5.95 -20.07 -0.12 -6.89 16 15 C -0.06 -2.38 7.22 24.99 0.18 -2.20 16 16 O -0.19 -9.05 10.65 -0.18 0.00 -9.05 16 17 C -0.03 -0.85 6.30 30.03 0.19 -0.66 16 18 C -0.10 -1.95 5.20 30.75 0.16 -1.79 16 19 C -0.09 -1.87 2.70 -10.62 -0.03 -1.90 16 20 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 21 C -0.14 -1.99 9.17 71.98 0.66 -1.33 16 22 C -0.04 -1.02 5.59 29.96 0.17 -0.86 16 23 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 25 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 1.38 8.11 -2.39 -0.02 1.36 16 31 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 Total: -1.00 -65.28 292.88 6.17 -59.10 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.04 Total: 10.09 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 2.87 Total: -54.36 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.24 Total: -52.39 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.00 Total: -9.05 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.28 6.17 -59.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.767 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds