Wall clock time and date at job start Mon Mar 30 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 C 1.52998 * 109.47292 * 119.99713 * 2 1 3 5 5 C 1.52999 * 109.47107 * 65.55810 * 4 2 1 6 6 H 1.09005 * 109.47254 * 305.67636 * 5 4 2 7 7 C 1.50703 * 109.47434 * 185.67741 * 5 4 2 8 8 H 1.07994 * 119.99439 * 332.69700 * 7 5 4 9 9 C 1.37881 * 119.99980 * 152.69753 * 7 5 4 10 10 N 1.31517 * 119.99943 * 8.46092 * 9 7 5 11 11 Si 1.86792 * 119.99776 * 188.45549 * 9 7 5 12 12 H 1.48502 * 109.47281 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47489 * 300.00270 * 11 9 7 14 14 H 1.48507 * 109.46950 * 60.00368 * 11 9 7 15 15 C 1.50699 * 109.47491 * 65.67564 * 5 4 2 16 16 C 1.38262 * 119.94222 * 63.31399 * 15 5 4 17 17 C 1.38149 * 120.05607 * 179.73154 * 16 15 5 18 18 C 1.38737 * 119.94299 * 0.54365 * 17 16 15 19 19 O 1.35892 * 120.05873 * 179.75168 * 18 17 16 20 20 C 1.38737 * 119.88584 * 359.73037 * 18 17 16 21 21 C 1.38142 * 119.94434 * 0.02562 * 20 18 17 22 22 H 1.09005 * 109.47233 * 297.27151 * 1 2 3 23 23 H 1.09000 * 109.47324 * 57.27617 * 1 2 3 24 24 H 1.09001 * 109.47087 * 177.27198 * 1 2 3 25 25 H 1.09002 * 109.47294 * 239.99865 * 2 1 3 26 26 H 1.08994 * 109.47407 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47036 * 300.00023 * 3 2 1 28 28 H 1.09002 * 109.47064 * 59.99725 * 3 2 1 29 29 H 1.09002 * 109.47652 * 305.55867 * 4 2 1 30 30 H 1.09007 * 109.47433 * 185.55465 * 4 2 1 31 31 H 0.96995 * 120.00055 * 354.78737 * 10 9 7 32 32 H 1.07997 * 119.97371 * 0.02562 * 16 15 5 33 33 H 1.07997 * 120.03305 * 180.27527 * 17 16 15 34 34 H 0.96700 * 114.00009 * 269.98055 * 19 18 17 35 35 H 1.08001 * 120.02633 * 179.97438 * 20 18 17 36 36 H 1.08005 * 119.97387 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6472 -2.1983 1.1814 6 1 0.5711 -2.2816 1.0290 7 6 2.0259 -2.8786 2.4718 8 1 2.8469 -2.4988 3.0617 9 6 1.3240 -3.9858 2.8991 10 7 0.4374 -4.5484 2.1072 11 14 1.6327 -4.6869 4.6028 12 1 0.7576 -5.8672 4.8184 13 1 3.0552 -5.0968 4.7192 14 1 1.3300 -3.6535 5.6255 15 6 2.3695 -2.8581 0.0351 16 6 3.7497 -2.9383 0.0436 17 6 4.4139 -3.5476 -1.0034 18 6 3.6953 -4.0691 -2.0695 19 8 4.3466 -4.6644 -3.1030 20 6 2.3107 -3.9823 -2.0783 21 6 1.6511 -3.3766 -1.0265 22 1 -0.3634 0.4709 0.9135 23 1 -0.3634 0.5555 -0.8646 24 1 -0.3633 -1.0265 -0.0489 25 1 1.8933 -0.5139 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.5977 -0.2681 2.1365 30 1 3.1255 -0.6358 1.3004 31 1 0.2223 -4.1413 1.2535 32 1 4.3089 -2.5286 0.8718 33 1 5.4918 -3.6140 -0.9942 34 1 4.5865 -4.0588 -3.8177 35 1 1.7491 -4.3871 -2.9072 36 1 0.5731 -3.3091 -1.0327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:56 Heat of formation + Delta-G solvation = -52.771883 kcal Electronic energy + Delta-G solvation = -16765.851610 eV Core-core repulsion = 14213.816770 eV Total energy + Delta-G solvation = -2552.034840 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19838 -37.21514 -35.42075 -33.30070 -30.50075 -30.21152 -27.40290 -26.76810 -24.58133 -22.63333 -21.87689 -20.56181 -18.97442 -17.86116 -16.84686 -15.40143 -15.00623 -14.52790 -14.35245 -13.77745 -13.72421 -13.31099 -12.78300 -12.73255 -12.34301 -12.11655 -11.88228 -11.48694 -11.29808 -11.17047 -10.86352 -10.76394 -10.46519 -10.19962 -10.07813 -9.90130 -9.83062 -9.34523 -8.69026 -8.40153 -8.24606 -7.48868 -6.38598 -4.09910 2.05656 2.10657 3.42950 3.43687 3.62468 4.40753 4.52117 4.77114 5.30941 5.41242 5.44008 5.48514 5.58834 5.61069 5.95406 6.03055 6.12438 6.16805 6.22301 6.23818 6.28445 6.43995 6.49334 6.54465 6.62843 6.67495 6.79251 6.94620 7.01871 7.08788 7.21778 7.39154 7.61622 7.68788 8.13531 8.18785 8.40526 8.83925 9.60977 11.00159 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.011101 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.838233 B = 2521.632022 C = 3689.587387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.092 4.092 5 C 0.057 3.943 6 H 0.045 0.955 7 C -0.590 4.590 8 H 0.051 0.949 9 C 0.023 3.977 10 N -0.903 5.903 11 Si 1.064 2.936 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.287 1.287 15 C -0.025 4.025 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.060 3.940 19 O -0.504 6.504 20 C -0.144 4.144 21 C -0.118 4.118 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.272 0.728 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.375 0.625 35 H 0.113 0.887 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 7.164 -6.598 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.130 4.130 5 C 0.038 3.962 6 H 0.063 0.937 7 C -0.628 4.628 8 H 0.070 0.930 9 C -0.182 4.182 10 N -0.538 5.538 11 Si 0.892 3.108 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.025 4.025 16 C -0.114 4.114 17 C -0.167 4.167 18 C 0.017 3.983 19 O -0.312 6.312 20 C -0.163 4.163 21 C -0.136 4.136 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.228 0.772 35 H 0.131 0.869 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.924 5.399 -5.229 8.065 hybrid contribution 0.571 1.448 -1.359 2.066 sum 3.495 6.847 -6.588 10.124 Atomic orbital electron populations 1.21833 0.95882 1.01845 1.00462 1.21201 0.95580 0.95217 0.99943 1.21833 1.00502 0.96970 1.00758 1.21647 0.99436 0.96434 0.95451 1.18163 0.95793 0.90522 0.91679 0.93702 1.21837 1.19288 1.16406 1.05263 0.93047 1.25797 0.94273 0.94197 1.03960 1.70785 1.33302 1.38085 1.11653 0.83607 0.76110 0.76290 0.74750 1.20817 1.21479 1.21374 1.20865 0.93674 0.94465 0.93546 1.20811 0.94671 0.98975 0.96930 1.21277 0.99402 1.00359 0.95680 1.18281 0.90223 0.99928 0.89888 1.84849 1.77757 1.37742 1.30878 1.21227 0.93611 1.01412 1.00021 1.20949 0.99441 0.99551 0.93702 0.93111 0.93945 0.92256 0.91752 0.93238 0.93661 0.93114 0.92587 0.93392 0.91679 0.86293 0.86839 0.77159 0.86864 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.90 37.15 0.33 -1.96 16 2 C -0.10 -1.68 2.82 -90.62 -0.26 -1.94 16 3 C -0.14 -2.01 9.19 37.16 0.34 -1.67 16 4 C -0.09 -1.81 4.05 -26.73 -0.11 -1.92 16 5 C 0.06 1.32 1.47 -92.92 -0.14 1.18 16 6 H 0.04 1.11 4.93 -51.93 -0.26 0.85 16 7 C -0.59 -15.64 7.79 -34.44 -0.27 -15.91 16 8 H 0.05 1.36 7.83 -52.49 -0.41 0.95 16 9 C 0.02 0.65 5.44 -17.82 -0.10 0.55 16 10 N -0.90 -26.50 13.63 55.43 0.76 -25.74 16 11 Si 1.06 24.85 29.91 -169.99 -5.08 19.77 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 15 C -0.02 -0.55 3.57 -104.60 -0.37 -0.92 16 16 C -0.10 -2.00 8.72 -39.61 -0.35 -2.35 16 17 C -0.15 -2.83 9.99 -39.43 -0.39 -3.22 16 18 C 0.06 1.13 6.71 -39.21 -0.26 0.87 16 19 O -0.50 -8.16 13.50 -19.40 -0.26 -8.43 16 20 C -0.14 -2.76 9.99 -39.43 -0.39 -3.15 16 21 C -0.12 -2.46 9.23 -39.61 -0.37 -2.83 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.04 6.59 -51.93 -0.34 0.70 16 25 H 0.06 1.13 7.22 -51.93 -0.37 0.75 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.93 7.41 -51.93 -0.38 0.55 16 31 H 0.27 7.82 6.27 -40.82 -0.26 7.56 16 32 H 0.12 2.45 7.66 -52.49 -0.40 2.05 16 33 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.38 4.01 9.06 45.56 0.41 4.42 16 35 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.11 2.30 7.95 -52.48 -0.42 1.88 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -29.97 296.11 -7.07 -37.04 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.61 Total: 6.17 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: -2.33 Total: -33.27 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.76 Total: -25.74 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.26 Total: -8.43 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.97 -7.07 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.733 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds