Wall clock time and date at job start Mon Mar 30 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47190 * 2 1 4 4 H 1.09000 * 109.47652 * 305.00770 * 3 2 1 5 5 C 1.53001 * 109.46923 * 65.00389 * 3 2 1 6 6 C 1.52999 * 109.47502 * 185.00108 * 3 2 1 7 7 H 1.09003 * 109.47051 * 300.00176 * 6 3 2 8 8 C 1.50697 * 109.47517 * 180.02562 * 6 3 2 9 9 H 1.08006 * 119.99656 * 324.62683 * 8 6 3 10 10 C 1.37868 * 120.00265 * 144.90024 * 8 6 3 11 11 N 1.31521 * 120.00254 * 355.06644 * 10 8 6 12 12 Si 1.86805 * 120.00268 * 175.06872 * 10 8 6 13 13 H 1.48495 * 109.46949 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47229 * 120.00059 * 12 10 8 15 15 H 1.48504 * 109.47111 * 240.00112 * 12 10 8 16 16 C 1.50699 * 109.46761 * 60.00201 * 6 3 2 17 17 C 1.38162 * 120.02916 * 59.94819 * 16 6 3 18 18 C 1.38247 * 120.05707 * 179.97438 * 17 16 6 19 19 C 1.38285 * 120.10995 * 0.03114 * 18 17 16 20 20 C 1.38126 * 120.06127 * 0.02562 * 19 18 17 21 21 C 1.38717 * 120.02869 * 239.66895 * 16 6 3 22 22 O 1.35902 * 120.05107 * 0.02562 * 21 16 6 23 23 H 1.08998 * 109.47572 * 59.99483 * 1 2 3 24 24 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47124 * 299.99171 * 1 2 3 26 26 H 1.08997 * 109.47155 * 240.00271 * 2 1 3 27 27 H 1.08998 * 109.47572 * 120.00517 * 2 1 3 28 28 H 1.09003 * 109.47343 * 59.99999 * 5 3 2 29 29 H 1.08998 * 109.47526 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.47298 * 299.99871 * 5 3 2 31 31 H 0.97001 * 120.00185 * 179.97438 * 11 10 8 32 32 H 1.08000 * 119.96956 * 359.97438 * 17 16 6 33 33 H 1.07995 * 119.94579 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.97208 * 179.97438 * 19 18 17 35 35 H 1.07995 * 120.03433 * 179.97438 * 20 19 18 36 36 H 0.96706 * 113.99796 * 90.00229 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 4.0672 2.8651 -0.1251 9 1 3.4863 3.6435 -0.5977 10 6 5.2709 3.1705 0.4738 11 7 5.9340 2.2422 1.1283 12 14 5.9601 4.9027 0.3557 13 1 5.0298 5.7531 -0.4294 14 1 6.1158 5.4676 1.7203 15 1 7.2829 4.8643 -0.3180 16 6 3.9634 0.7707 -1.4135 17 6 3.5275 1.2775 -2.6227 18 6 3.8933 0.6602 -3.8044 19 6 4.6954 -0.4659 -3.7795 20 6 5.1329 -0.9773 -2.5732 21 6 4.7729 -0.3554 -1.3862 22 8 5.2071 -0.8528 -0.1983 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0699 1.5874 2.1492 29 1 1.9982 3.1542 1.3073 30 1 0.5489 2.1252 1.3971 31 1 6.7810 2.4569 1.5493 32 1 2.9006 2.1566 -2.6447 33 1 3.5513 1.0576 -4.7485 34 1 4.9795 -0.9466 -4.7040 35 1 5.7589 -1.8570 -2.5542 36 1 4.6159 -1.5110 0.1922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:02 Heat of formation + Delta-G solvation = -60.765090 kcal Electronic energy + Delta-G solvation = -17113.110093 eV Core-core repulsion = 14560.728642 eV Total energy + Delta-G solvation = -2552.381451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68753 -37.80071 -37.14920 -34.67534 -32.48777 -30.69540 -30.22444 -27.93130 -26.10084 -23.95127 -23.19556 -22.06617 -20.22260 -18.95986 -18.34290 -16.90999 -16.42432 -16.24400 -15.84238 -15.57788 -14.82825 -14.72673 -14.37724 -14.17873 -13.35503 -13.21077 -13.07502 -12.93322 -12.79403 -12.65784 -12.50142 -12.34870 -12.17843 -11.91369 -11.61534 -11.32719 -11.07829 -10.79416 -10.66340 -10.41820 -9.46496 -9.05390 -8.02158 -6.10219 0.61984 0.77462 1.36657 1.39857 1.48879 2.44393 3.03756 3.29632 3.67056 4.15003 4.26691 4.29155 4.32244 4.41022 4.54706 4.69158 4.78421 4.89100 4.94441 5.01015 5.13637 5.19540 5.24935 5.31372 5.33143 5.46857 5.53907 5.60882 5.68964 5.74754 5.76860 5.85235 5.99688 6.16466 6.27967 6.49033 7.03735 7.18227 7.52601 9.02421 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.012143 C = 0.009015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.927655 B = 2305.260583 C = 3105.250244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.073 4.073 4 H 0.049 0.951 5 C -0.123 4.123 6 C 0.071 3.929 7 H 0.043 0.957 8 C -0.506 4.506 9 H 0.048 0.952 10 C 0.018 3.982 11 N -0.903 5.903 12 Si 0.934 3.066 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.290 1.290 16 C -0.065 4.065 17 C -0.121 4.121 18 C -0.135 4.135 19 C -0.132 4.132 20 C -0.161 4.161 21 C 0.073 3.927 22 O -0.498 6.498 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.254 0.746 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -5.927 -6.008 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.092 4.092 4 H 0.067 0.933 5 C -0.180 4.180 6 C 0.052 3.948 7 H 0.061 0.939 8 C -0.544 4.544 9 H 0.066 0.934 10 C -0.182 4.182 11 N -0.542 5.542 12 Si 0.761 3.239 13 H -0.189 1.189 14 H -0.208 1.208 15 H -0.216 1.216 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.179 4.179 21 C 0.029 3.971 22 O -0.308 6.308 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.011 -5.567 -5.979 10.766 hybrid contribution 0.617 0.750 0.387 1.045 sum -6.395 -4.817 -5.592 9.766 Atomic orbital electron populations 1.21766 0.94701 1.01754 1.01863 1.21526 0.96608 0.96400 1.00522 1.21131 0.95822 0.95109 0.97123 0.93255 1.21612 0.99496 1.00171 0.96752 1.17914 0.91638 0.94168 0.91066 0.93873 1.21226 1.04526 0.93769 1.34842 0.93386 1.25639 0.97786 0.99581 0.95182 1.70126 1.15145 1.34014 1.34895 0.85867 0.78282 0.82014 0.77703 1.18895 1.20757 1.21628 1.21033 0.94297 0.93216 0.98103 1.20978 1.01227 0.99643 0.92093 1.21369 0.99238 0.96570 0.98119 1.21123 0.99088 0.97276 0.97535 1.21556 1.02443 1.01496 0.92405 1.18689 0.97756 0.95128 0.85563 1.84956 1.49709 1.61188 1.34942 0.92854 0.91981 0.92317 0.93371 0.93203 0.94888 0.94092 0.91986 0.93672 0.86919 0.83998 0.83399 0.85069 0.75977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.67 71.98 0.70 -3.07 16 2 C -0.11 -3.74 5.25 30.59 0.16 -3.58 16 3 C -0.07 -2.90 1.79 -10.80 -0.02 -2.92 16 4 H 0.05 1.95 7.39 -2.39 -0.02 1.93 16 5 C -0.12 -4.75 8.70 71.98 0.63 -4.12 16 6 C 0.07 3.41 1.67 -12.29 -0.02 3.39 16 7 H 0.04 2.37 6.09 -2.39 -0.01 2.36 16 8 C -0.51 -27.29 6.67 25.60 0.17 -27.12 16 9 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 10 C 0.02 1.01 5.45 84.65 0.46 1.47 16 11 N -0.90 -54.00 12.77 21.45 0.27 -53.72 16 12 Si 0.93 44.82 29.54 68.60 2.03 46.85 16 13 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 C -0.07 -2.92 3.44 -19.77 -0.07 -2.99 16 17 C -0.12 -4.84 8.82 22.25 0.20 -4.64 16 18 C -0.14 -4.45 10.04 22.28 0.22 -4.23 16 19 C -0.13 -4.14 10.04 22.25 0.22 -3.92 16 20 C -0.16 -5.75 9.99 22.37 0.22 -5.52 16 21 C 0.07 3.12 6.68 22.51 0.15 3.27 16 22 O -0.50 -21.75 12.27 -92.44 -1.13 -22.89 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.47 6.57 -2.38 -0.02 1.45 16 26 H 0.05 1.64 7.05 -2.39 -0.02 1.62 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.73 7.22 -2.39 -0.02 1.71 16 30 H 0.06 1.96 6.57 -2.39 -0.02 1.94 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.11 4.44 7.57 -2.91 -0.02 4.42 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.39 12.88 9.06 -74.05 -0.67 12.21 16 Total: -1.00 -64.73 294.48 4.58 -60.15 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.39 Total: 23.59 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 3.02 Total: -53.98 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.27 Total: -53.72 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.13 Total: -22.89 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.73 4.58 -60.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.613 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds