Wall clock time and date at job start Mon Mar 30 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.52995 * 109.46777 * 240.00129 * 2 1 3 5 5 C 1.52999 * 109.46828 * 120.00057 * 2 1 3 6 6 H 1.09003 * 109.46426 * 175.77833 * 5 2 1 7 7 C 1.50699 * 109.47479 * 55.77935 * 5 2 1 8 8 H 1.08005 * 119.99325 * 300.18449 * 7 5 2 9 9 C 1.37876 * 120.00390 * 119.91004 * 7 5 2 10 10 N 1.31505 * 120.00198 * 172.60757 * 9 7 5 11 11 Si 1.86799 * 119.99910 * 352.61275 * 9 7 5 12 12 H 1.48499 * 109.47070 * 84.74570 * 11 9 7 13 13 H 1.48493 * 109.47198 * 204.75260 * 11 9 7 14 14 H 1.48501 * 109.47160 * 324.75100 * 11 9 7 15 15 C 1.50694 * 109.47300 * 295.77314 * 5 2 1 16 16 C 1.38269 * 119.94674 * 76.07063 * 15 5 2 17 17 C 1.38139 * 120.06088 * 179.72629 * 16 15 5 18 18 C 1.38730 * 119.94070 * 0.54807 * 17 16 15 19 19 O 1.35905 * 120.05696 * 179.74730 * 18 17 16 20 20 C 1.38731 * 119.89130 * 359.72280 * 18 17 16 21 21 C 1.38143 * 119.94168 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47046 * 306.94682 * 1 2 3 23 23 H 1.08999 * 109.47133 * 66.95125 * 1 2 3 24 24 H 1.09005 * 109.47126 * 186.95122 * 1 2 3 25 25 H 1.09002 * 109.46860 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46863 * 300.00131 * 3 2 1 27 27 H 1.09005 * 109.47132 * 60.00334 * 3 2 1 28 28 H 1.09002 * 109.47370 * 305.19879 * 4 2 1 29 29 H 1.08996 * 109.47227 * 65.20452 * 4 2 1 30 30 H 1.09003 * 109.46805 * 185.20464 * 4 2 1 31 31 H 0.97005 * 120.00228 * 179.97438 * 10 9 7 32 32 H 1.08007 * 119.96608 * 359.97438 * 16 15 5 33 33 H 1.07992 * 120.03077 * 180.27014 * 17 16 15 34 34 H 0.96695 * 114.00071 * 269.97866 * 19 18 17 35 35 H 1.08001 * 120.03124 * 179.97438 * 20 18 17 36 36 H 1.08006 * 119.97069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1274 -0.7872 1.2122 7 6 1.4541 -2.1087 1.3027 8 1 0.3829 -2.2413 1.3408 9 6 2.2852 -3.2088 1.2973 10 7 1.7869 -4.4104 1.4899 11 14 4.1193 -2.9923 1.0164 12 1 4.7825 -2.6686 2.3050 13 1 4.6881 -4.2500 0.4691 14 1 4.3452 -1.8860 0.0519 15 6 1.6250 0.0470 2.4774 16 6 0.3175 -0.0174 2.9228 17 6 -0.0641 0.6814 4.0516 18 6 0.8630 1.4573 4.7321 19 8 0.4888 2.1498 5.8400 20 6 2.1729 1.5247 4.2801 21 6 2.5507 0.8198 3.1537 22 1 -0.3633 0.6177 0.8213 23 1 -0.3633 0.4023 -0.9456 24 1 -0.3634 -1.0202 0.1244 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8901 28 1 1.6026 -1.7185 -1.2971 29 1 1.7547 -0.1564 -2.1367 30 1 3.1260 -0.8027 -1.2039 31 1 2.3716 -5.1844 1.4857 32 1 -0.4050 -0.6177 2.3898 33 1 -1.0844 0.6274 4.4015 34 1 0.1707 3.0441 5.6560 35 1 2.8964 2.1283 4.8079 36 1 3.5705 0.8717 2.8017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:07 Heat of formation + Delta-G solvation = -36.677838 kcal Electronic energy + Delta-G solvation = -17110.016672 eV Core-core repulsion = 14558.679723 eV Total energy + Delta-G solvation = -2551.336950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47341 -37.60830 -35.43627 -32.44783 -30.45177 -30.10401 -27.30249 -26.56853 -25.97728 -23.01859 -22.02605 -20.75455 -18.06400 -17.75228 -16.91193 -15.42453 -14.89155 -14.82051 -14.35284 -13.73094 -13.40675 -13.15186 -13.08033 -12.77972 -12.22919 -11.82479 -11.70887 -11.51018 -11.40498 -11.08554 -10.86602 -10.79259 -10.48641 -10.34929 -9.95961 -9.78665 -9.68908 -9.38708 -8.92865 -8.55364 -8.33196 -7.63802 -6.12113 -4.09854 1.91715 1.99266 3.26586 3.34137 3.35442 4.28569 4.38426 4.67514 5.18925 5.45543 5.49799 5.66500 5.76340 5.77812 5.98881 6.09768 6.17518 6.26839 6.32380 6.44959 6.49670 6.52318 6.55224 6.56583 6.73347 6.80506 6.92586 6.98541 7.07163 7.18045 7.24982 7.32027 7.46835 7.51376 7.75023 8.05367 8.47260 8.91677 9.50911 11.00161 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.010004 C = 0.008768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.307091 B = 2798.103515 C = 3192.569886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.131 4.131 5 C 0.052 3.948 6 H 0.042 0.958 7 C -0.499 4.499 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.865 3.135 12 H -0.277 1.277 13 H -0.291 1.291 14 H -0.259 1.259 15 C -0.033 4.033 16 C -0.084 4.084 17 C -0.150 4.150 18 C 0.067 3.933 19 O -0.504 6.504 20 C -0.148 4.148 21 C -0.124 4.124 22 H 0.047 0.953 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.377 0.623 35 H 0.115 0.885 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 11.860 -0.045 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.188 4.188 5 C 0.033 3.967 6 H 0.060 0.940 7 C -0.537 4.537 8 H 0.099 0.901 9 C -0.127 4.127 10 N -0.532 5.532 11 Si 0.693 3.307 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.184 1.184 15 C -0.033 4.033 16 C -0.102 4.102 17 C -0.169 4.169 18 C 0.024 3.976 19 O -0.313 6.313 20 C -0.167 4.167 21 C -0.142 4.142 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.231 0.769 35 H 0.133 0.867 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.415 11.119 0.258 11.129 hybrid contribution 0.978 0.368 -0.192 1.063 sum 0.563 11.487 0.065 11.501 Atomic orbital electron populations 1.21979 0.95593 1.02616 0.99245 1.20548 0.95431 0.92974 0.96493 1.21987 1.00164 0.97441 1.00425 1.21783 1.00294 1.01183 0.95507 1.18397 0.96440 0.94493 0.87365 0.93985 1.20880 0.95206 0.87201 1.50370 0.90103 1.25044 0.98049 0.95268 0.94295 1.69893 1.35801 0.98497 1.49041 0.87074 0.86713 0.77639 0.79259 1.20335 1.21698 1.18392 1.20611 0.92708 0.92412 0.97574 1.21073 0.96913 0.97404 0.94839 1.21365 0.99132 1.00115 0.96240 1.18336 0.92584 0.98066 0.88652 1.84841 1.86013 1.30327 1.30109 1.21204 0.95708 1.02349 0.97405 1.20978 0.99535 0.98006 0.95728 0.93390 0.94903 0.90976 0.93727 0.94074 0.93063 0.91289 0.94777 0.93793 0.92622 0.85067 0.86546 0.76908 0.86742 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.00 37.16 0.26 -2.20 16 2 C -0.05 -1.02 0.57 -154.51 -0.09 -1.11 16 3 C -0.14 -2.36 8.02 37.16 0.30 -2.06 16 4 C -0.13 -2.48 8.19 37.15 0.30 -2.17 16 5 C 0.05 1.13 1.39 -92.93 -0.13 1.00 16 6 H 0.04 0.95 4.61 -51.93 -0.24 0.71 16 7 C -0.50 -12.74 6.38 -34.44 -0.22 -12.96 16 8 H 0.08 2.21 5.90 -52.48 -0.31 1.90 16 9 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 11 Si 0.87 20.78 26.94 -169.99 -4.58 16.20 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.26 -5.83 5.52 56.52 0.31 -5.52 16 15 C -0.03 -0.66 3.50 -104.60 -0.37 -1.03 16 16 C -0.08 -1.64 7.13 -39.61 -0.28 -1.92 16 17 C -0.15 -2.64 9.99 -39.44 -0.39 -3.03 16 18 C 0.07 1.15 6.70 -39.22 -0.26 0.88 16 19 O -0.50 -7.45 13.50 -19.44 -0.26 -7.71 16 20 C -0.15 -2.52 9.99 -39.43 -0.39 -2.91 16 21 C -0.12 -2.30 9.00 -39.61 -0.36 -2.66 16 22 H 0.05 0.82 5.89 -51.93 -0.31 0.51 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.43 6.07 -51.93 -0.32 1.11 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.84 6.73 -51.93 -0.35 0.49 16 28 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.85 6.85 -51.93 -0.36 0.49 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 2.60 5.71 -52.48 -0.30 2.30 16 33 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.38 3.56 9.06 45.56 0.41 3.98 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.11 1.97 8.01 -52.48 -0.42 1.55 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -29.06 280.81 -5.90 -34.96 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.33 Total: 6.01 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -1.73 Total: -28.21 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.26 Total: -7.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.58 Total: 16.20 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.06 -5.90 -34.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.715 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds