Wall clock time and date at job start Mon Mar 30 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99898 * 2 1 4 4 H 1.48506 * 109.47123 * 269.99567 * 3 2 1 5 5 H 1.48502 * 109.47447 * 29.99244 * 3 2 1 6 6 H 1.48496 * 109.47362 * 149.99729 * 3 2 1 7 7 C 1.37880 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99878 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99462 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46599 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47037 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47098 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00147 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46995 * 180.02562 * 14 13 12 16 16 C 1.38227 * 119.62059 * 95.01860 * 15 14 13 17 17 C 1.38627 * 119.15702 * 179.74122 * 16 15 14 18 18 C 1.38669 * 118.42389 * 0.47826 * 17 16 15 19 19 C 1.38186 * 119.16143 * 359.49762 * 18 17 16 20 20 N 1.31856 * 119.61137 * 274.99289 * 15 14 13 21 21 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46974 * 60.01093 * 9 7 2 23 23 H 1.08999 * 109.47657 * 300.00417 * 9 7 2 24 24 H 1.08996 * 109.46827 * 60.00682 * 10 9 7 25 25 H 1.08999 * 109.47194 * 300.00379 * 10 9 7 26 26 H 1.09001 * 109.46889 * 60.00100 * 11 10 9 27 27 H 1.09003 * 109.47212 * 300.00583 * 11 10 9 28 28 H 1.08996 * 109.46739 * 60.00428 * 12 11 10 29 29 H 1.08999 * 109.47168 * 300.00194 * 12 11 10 30 30 H 1.00904 * 111.00094 * 303.95467 * 13 12 11 31 31 H 1.08997 * 109.47637 * 59.99665 * 14 13 12 32 32 H 1.09003 * 109.46634 * 299.99663 * 14 13 12 33 33 H 1.07998 * 120.41916 * 359.95342 * 16 15 14 34 34 H 1.08008 * 120.78688 * 180.22921 * 17 16 15 35 35 H 1.08002 * 120.42244 * 179.78279 * 18 17 16 36 36 H 1.07996 * 119.61757 * 180.25243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0790 0.0028 13 7 7.5306 -4.0790 0.0046 14 6 8.0570 -5.4504 0.0045 15 6 9.5636 -5.4101 0.0070 16 6 10.2473 -5.4978 1.2051 17 6 11.6332 -5.4652 1.1958 18 6 12.2822 -5.3350 -0.0228 19 6 11.5315 -5.2532 -1.1801 20 7 10.2141 -5.2922 -1.1339 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8753 -0.6803 -0.8888 24 1 3.6587 -3.1501 -0.8893 25 1 3.6578 -3.1506 0.8907 26 1 5.9142 -2.1230 0.8927 27 1 5.9157 -2.1223 -0.8872 28 1 5.6990 -4.5928 -0.8875 29 1 5.6975 -4.5928 0.8924 30 1 7.8931 -3.5528 -0.7763 31 1 7.7087 -5.9734 -0.8861 32 1 7.7065 -5.9742 0.8939 33 1 9.7088 -5.5939 2.1363 34 1 12.1941 -5.5354 2.1161 35 1 13.3608 -5.3026 -0.0672 36 1 12.0295 -5.1558 -2.1335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385872065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:13 Heat of formation + Delta-G solvation = -7.932398 kcal Electronic energy + Delta-G solvation = -15085.493796 eV Core-core repulsion = 12567.696094 eV Total energy + Delta-G solvation = -2517.797703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08061 -37.94862 -36.01903 -34.34198 -33.32952 -32.54129 -30.32323 -27.32794 -25.27445 -24.38596 -22.69346 -22.68693 -21.67703 -18.86913 -17.87432 -17.24973 -16.86420 -16.45186 -16.26834 -15.95808 -15.62411 -14.83163 -14.69012 -14.43236 -14.08865 -13.73012 -13.65162 -13.43706 -13.03431 -12.86026 -12.45307 -12.27991 -12.10627 -11.74374 -11.38435 -11.32670 -11.22531 -10.79300 -10.76079 -10.38668 -9.97198 -9.43081 -8.29558 -6.33547 0.17608 0.39470 1.35941 1.37894 1.50690 2.36790 2.76346 3.05776 3.24726 3.51716 3.79431 4.05546 4.10302 4.18041 4.24629 4.27660 4.47537 4.53156 4.59463 4.64726 4.77226 4.80303 4.88624 4.91601 5.14205 5.19008 5.25853 5.27998 5.30869 5.57859 5.65805 5.68739 5.81019 5.98578 6.29413 6.31596 6.74801 7.07016 7.31273 8.87469 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.053918 B = 0.003294 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.177699 B = 8498.951815 C = 8705.193010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.068 3.932 13 N -0.687 5.687 14 C 0.110 3.890 15 C 0.110 3.890 16 C -0.161 4.161 17 C -0.080 4.080 18 C -0.172 4.172 19 C 0.081 3.919 20 N -0.514 5.514 21 H 0.266 0.734 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.341 0.659 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.513 -11.466 1.541 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.061 4.061 13 N -0.318 5.318 14 C -0.020 4.020 15 C -0.028 4.028 16 C -0.181 4.181 17 C -0.106 4.106 18 C -0.191 4.191 19 C -0.076 4.076 20 N -0.224 5.224 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 26.924 -11.256 1.455 29.219 hybrid contribution -0.191 0.380 -0.300 0.520 sum 26.733 -10.876 1.155 28.884 Atomic orbital electron populations 1.70081 1.08335 1.28174 1.52845 1.26082 0.95676 1.03715 0.94122 0.85600 0.79465 0.78014 0.79220 1.19152 1.20842 1.17017 1.21577 0.92408 0.93082 1.50219 0.95110 1.19549 0.93633 0.95498 0.96361 1.21288 0.94483 0.96882 1.00624 1.21489 0.94458 0.96371 1.02132 1.21908 0.86470 0.96821 1.00901 1.60552 1.07717 1.13191 1.50300 1.20813 0.88383 0.90595 1.02171 1.21233 0.96286 0.96059 0.89179 1.22196 0.95797 1.00843 0.99270 1.22022 0.94127 0.94622 0.99807 1.22508 1.02969 1.00615 0.93037 1.23189 0.88922 0.95258 1.00185 1.67438 1.11609 1.13097 1.30304 0.92500 0.96276 0.96552 0.93500 0.93140 0.91664 0.92330 0.95051 0.90398 0.84100 0.94075 0.88243 0.83465 0.82004 0.81848 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 2 C 0.00 0.02 5.47 84.65 0.46 0.49 16 3 Si 0.95 45.51 27.47 68.60 1.88 47.40 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.53 -31.97 9.66 25.60 0.25 -31.72 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.09 -3.75 5.15 30.60 0.16 -3.59 16 11 C -0.11 -3.34 5.47 30.59 0.17 -3.17 16 12 C 0.07 1.78 5.69 86.30 0.49 2.27 16 13 N -0.69 -16.68 6.49 -517.94 -3.36 -20.04 16 14 C 0.11 2.33 5.99 85.56 0.51 2.84 16 15 C 0.11 2.33 6.29 42.55 0.27 2.60 16 16 C -0.16 -2.72 9.72 22.36 0.22 -2.50 16 17 C -0.08 -1.03 10.18 22.47 0.23 -0.80 16 18 C -0.17 -2.11 10.11 22.36 0.23 -1.88 16 19 C 0.08 1.35 11.18 84.67 0.95 2.30 16 20 N -0.51 -11.60 10.27 -183.88 -1.89 -13.49 16 21 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 22 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 23 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.34 8.58 8.72 -89.69 -0.78 7.80 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.74 304.97 1.18 -69.56 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.20 Total: 11.30 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.05 Total: -33.67 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.95 Total: -94.58 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -70.74 1.18 -69.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385872065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.624 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds