Wall clock time and date at job start Mon Mar 30 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 O 1.42903 * 109.47131 * 119.99791 * 2 1 3 5 5 C 1.50701 * 109.47293 * 239.99988 * 2 1 3 6 6 C 1.38254 * 120.00254 * 280.00011 * 5 2 1 7 7 C 1.38212 * 120.00319 * 180.02562 * 6 5 2 8 8 C 1.38260 * 119.99650 * 0.26336 * 7 6 5 9 9 C 1.38208 * 120.00088 * 359.47803 * 8 7 6 10 10 C 1.50698 * 120.00211 * 180.23547 * 9 8 7 11 11 H 1.09000 * 109.47667 * 160.28006 * 10 9 8 12 12 N 1.46897 * 109.46896 * 40.28260 * 10 9 8 13 13 C 1.52995 * 109.47223 * 280.28695 * 10 9 8 14 14 C 1.50701 * 109.47288 * 185.00061 * 13 10 9 15 15 H 1.08002 * 119.99715 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00284 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99927 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00061 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47305 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47244 * 119.99677 * 18 16 14 21 21 H 1.48493 * 109.47288 * 239.99559 * 18 16 14 22 22 C 1.38216 * 120.00020 * 100.02299 * 5 2 1 23 23 H 1.09003 * 109.46827 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47233 * 300.00121 * 1 2 3 25 25 H 1.08997 * 109.47205 * 60.00244 * 1 2 3 26 26 H 0.96706 * 113.99727 * 60.00380 * 4 2 1 27 27 H 1.07999 * 119.99740 * 0.02562 * 6 5 2 28 28 H 1.08002 * 119.99812 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.99616 * 179.72197 * 8 7 6 30 30 H 1.00902 * 111.00416 * 176.05046 * 12 10 9 31 31 H 1.00906 * 111.00570 * 300.00268 * 12 10 9 32 32 H 1.09006 * 109.47164 * 304.99474 * 13 10 9 33 33 H 1.09000 * 109.47524 * 64.99812 * 13 10 9 34 34 H 0.96999 * 120.00106 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.99666 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2305 6 6 2.0668 -2.0921 -1.2654 7 6 2.5281 -2.7436 -2.3937 8 6 2.9601 -2.0135 -3.4854 9 6 2.9207 -0.6324 -3.4525 10 6 3.3867 0.1633 -4.6445 11 1 2.9730 1.1705 -4.5933 12 7 2.9312 -0.4909 -5.8783 13 6 4.9148 0.2389 -4.6415 14 6 5.3756 1.1355 -5.7616 15 1 4.6510 1.6042 -6.4110 16 6 6.7223 1.3566 -5.9581 17 7 7.6047 0.7854 -5.1677 18 14 7.2935 2.4675 -7.3470 19 1 6.1131 2.9828 -8.0861 20 1 8.0625 3.6069 -6.7852 21 1 8.1591 1.6954 -8.2742 22 6 2.4592 0.0193 -2.3239 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5953 1.2329 27 1 1.7333 -2.6623 -0.4110 28 1 2.5553 -3.8230 -2.4207 29 1 3.3248 -2.5226 -4.3653 30 1 3.1755 0.0570 -6.6896 31 1 3.3015 -1.4269 -5.9493 32 1 5.2567 0.6430 -3.6886 33 1 5.3282 -0.7598 -4.7820 34 1 8.5521 0.9412 -5.3057 35 1 2.4322 1.0987 -2.2966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:43 Heat of formation + Delta-G solvation = -47.100529 kcal Electronic energy + Delta-G solvation = -16203.596110 eV Core-core repulsion = 13586.381288 eV Total energy + Delta-G solvation = -2617.214822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57570 -37.27901 -35.17238 -32.52904 -31.82290 -30.16514 -28.92331 -27.96596 -24.65002 -23.60233 -22.11121 -21.35314 -19.25543 -17.29588 -16.56612 -15.81024 -15.75314 -14.90594 -14.63122 -14.46817 -14.01396 -13.37242 -13.30513 -13.08698 -12.58684 -12.34124 -12.07471 -11.97500 -11.78891 -11.51917 -11.11447 -10.92142 -10.83157 -10.55408 -10.26741 -10.08749 -9.88348 -9.17727 -8.54586 -8.43778 -8.32085 -7.68407 -6.09804 -4.14738 1.67998 1.76903 3.24740 3.32976 3.36082 4.06089 4.37312 4.45031 4.70423 5.00035 5.11287 5.22634 5.26350 5.29044 5.40360 5.58578 5.68241 5.75296 5.88586 5.96477 6.00399 6.14336 6.35140 6.47933 6.70601 6.78528 6.80913 7.09567 7.33971 7.45641 7.55978 7.56681 7.83949 8.02641 8.18950 8.30945 8.92267 9.50655 11.00856 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.005388 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.875572 B = 5195.136531 C = 5393.177558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.144 3.856 3 H 0.106 0.894 4 O -0.559 6.559 5 C -0.120 4.120 6 C -0.131 4.131 7 C -0.118 4.118 8 C -0.107 4.107 9 C -0.042 4.042 10 C 0.123 3.877 11 H 0.076 0.924 12 N -0.840 5.840 13 C 0.001 3.999 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.109 4.109 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.371 0.629 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.346 0.654 31 H 0.328 0.672 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.261 -4.792 7.326 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 H 0.123 0.877 4 O -0.364 6.364 5 C -0.120 4.120 6 C -0.149 4.149 7 C -0.136 4.136 8 C -0.125 4.125 9 C -0.042 4.042 10 C 0.012 3.988 11 H 0.094 0.906 12 N -0.368 5.368 13 C -0.038 4.038 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.128 4.128 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.219 0.781 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.544 -4.120 7.760 15.315 hybrid contribution 1.352 -0.007 -1.156 1.778 sum -11.192 -4.127 6.604 13.635 Atomic orbital electron populations 1.22472 0.95741 1.02619 1.02721 1.20790 0.92733 0.96050 0.81868 0.87664 1.86618 1.77475 1.28923 1.43425 1.20368 1.01063 0.94302 0.96284 1.20614 1.02588 0.93572 0.98122 1.21004 0.99627 0.99361 0.93642 1.20943 0.99545 0.93836 0.98207 1.20153 0.94618 0.93981 0.95486 1.20563 0.96710 0.95261 0.86268 0.90609 1.59273 1.65966 1.06631 1.04968 1.19799 0.88663 0.97484 0.97838 1.21189 0.91823 1.28961 1.14445 0.92443 1.25026 0.96934 0.95932 0.96335 1.69986 1.01489 1.43465 1.37954 0.86524 0.78811 0.80527 0.82082 1.19638 1.20957 1.21012 1.20817 0.99458 0.99634 0.92883 0.92300 0.91791 0.91238 0.78126 0.87122 0.86546 0.86322 0.84022 0.85995 0.96179 0.96442 0.92919 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.51 37.16 0.35 -1.41 16 2 C 0.14 1.77 3.83 -27.88 -0.11 1.67 16 3 H 0.11 1.31 8.00 -51.93 -0.42 0.89 16 4 O -0.56 -6.99 13.19 -35.23 -0.46 -7.45 16 5 C -0.12 -1.74 4.97 -104.62 -0.52 -2.26 16 6 C -0.13 -1.78 9.32 -39.58 -0.37 -2.15 16 7 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 8 C -0.11 -1.81 9.29 -39.58 -0.37 -2.18 16 9 C -0.04 -0.77 4.95 -104.63 -0.52 -1.29 16 10 C 0.12 2.52 2.99 -68.87 -0.21 2.32 16 11 H 0.08 1.58 8.00 -51.93 -0.42 1.16 16 12 N -0.84 -15.68 9.02 -5.66 -0.05 -15.73 16 13 C 0.00 0.01 4.60 -27.89 -0.13 -0.11 16 14 C -0.53 -14.22 8.55 -34.44 -0.29 -14.51 16 15 H 0.06 1.50 7.14 -52.49 -0.37 1.12 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.11 -1.84 9.29 -39.58 -0.37 -2.21 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.37 3.31 7.50 45.56 0.34 3.65 16 27 H 0.11 1.15 6.79 -52.49 -0.36 0.79 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.93 6.68 -52.48 -0.35 1.58 16 30 H 0.35 6.58 7.90 -39.29 -0.31 6.27 16 31 H 0.33 5.85 7.35 -39.29 -0.29 5.56 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 1.89 8.02 -52.49 -0.42 1.47 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -30.66 293.64 -7.66 -38.32 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.26 Total: 12.65 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -3.02 Total: -22.69 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.69 Total: -41.42 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.46 Total: -7.45 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.66 -7.66 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.783 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds