Wall clock time and date at job start Mon Mar 30 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00423 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99948 * 3 2 1 5 5 H 1.48502 * 109.46673 * 29.99356 * 3 2 1 6 6 H 1.48492 * 109.47461 * 149.99621 * 3 2 1 7 7 C 1.37882 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00212 * 0.28114 * 7 2 1 10 10 H 1.08995 * 110.27814 * 57.63071 * 9 7 2 11 11 C 1.54598 * 110.30554 * 295.43647 * 9 7 2 12 12 C 1.54944 * 102.91988 * 219.12751 * 11 9 7 13 13 N 1.48527 * 103.22616 * 37.41688 * 12 11 9 14 14 C 1.46906 * 110.99831 * 200.27837 * 13 12 11 15 15 C 1.52994 * 109.46981 * 301.68474 * 14 13 12 16 16 H 1.09004 * 109.64515 * 56.39032 * 15 14 13 17 17 C 1.53021 * 109.64321 * 177.02650 * 15 14 13 18 18 C 1.50064 * 110.15002 * 169.12101 * 17 15 14 19 19 C 1.29438 * 124.07777 * 342.86774 * 18 17 15 20 20 C 1.50068 * 124.07342 * 0.46704 * 19 18 17 21 21 C 1.53023 * 110.14761 * 342.86914 * 20 19 18 22 22 C 1.47898 * 105.82457 * 320.79053 * 13 12 11 23 23 H 0.97005 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.08996 * 110.72568 * 337.48829 * 11 9 7 25 25 H 1.08998 * 110.72431 * 100.77419 * 11 9 7 26 26 H 1.09000 * 110.66461 * 278.97793 * 12 11 9 27 27 H 1.08996 * 110.66519 * 155.85594 * 12 11 9 28 28 H 1.09004 * 109.47156 * 61.68340 * 14 13 12 29 29 H 1.09004 * 109.46973 * 181.68298 * 14 13 12 30 30 H 1.09008 * 109.35572 * 289.32596 * 17 15 14 31 31 H 1.08999 * 109.36321 * 48.90955 * 17 15 14 32 32 H 1.08001 * 117.96644 * 162.84739 * 18 17 15 33 33 H 1.08000 * 117.96448 * 180.44729 * 19 18 17 34 34 H 1.09003 * 109.36036 * 222.66711 * 20 19 18 35 35 H 1.08997 * 109.24869 * 103.00910 * 20 19 18 36 36 H 1.08997 * 109.64427 * 289.75358 * 21 20 19 37 37 H 1.09006 * 109.81917 * 169.21722 * 21 20 19 38 38 H 1.08999 * 109.92097 * 265.98519 * 22 13 12 39 39 H 1.08997 * 109.92268 * 144.68533 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 -0.0053 10 1 0.5917 -2.5509 -0.8717 11 6 0.4378 -2.6550 1.3003 12 6 0.6026 -4.1592 1.6336 13 7 2.0058 -4.4431 1.2383 14 6 2.2118 -5.8820 1.0250 15 6 1.8636 -6.6424 2.3061 16 1 0.8408 -6.4105 2.6033 17 6 2.0055 -8.1469 2.0659 18 6 1.9278 -8.8879 3.3685 19 6 2.0828 -8.3343 4.5282 20 6 2.3518 -6.8721 4.7327 21 6 2.8305 -6.2365 3.4256 22 6 2.2345 -3.6842 -0.0104 23 1 -0.4850 0.8401 -0.0004 24 1 0.8583 -2.0360 2.0928 25 1 -0.6109 -2.4097 1.1332 26 1 -0.0917 -4.7613 1.0475 27 1 0.4602 -4.3347 2.6999 28 1 1.5699 -6.2245 0.2133 29 1 3.2545 -6.0652 0.7656 30 1 1.2038 -8.4852 1.4094 31 1 2.9665 -8.3482 1.5925 32 1 1.7300 -9.9492 3.3365 33 1 2.0138 -8.9637 5.4032 34 1 3.1196 -6.7494 5.4965 35 1 1.4355 -6.3804 5.0592 36 1 3.8334 -6.5929 3.1907 37 1 2.8413 -5.1510 3.5248 38 1 2.0426 -4.3221 -0.8731 39 1 3.2598 -3.3156 -0.0385 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402350310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:39 Heat of formation + Delta-G solvation = -1.857188 kcal Electronic energy + Delta-G solvation = -16905.148621 eV Core-core repulsion = 14425.728791 eV Total energy + Delta-G solvation = -2479.419829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07696 -37.37646 -33.48840 -31.85059 -30.65890 -29.33745 -28.16100 -25.20744 -23.67267 -22.95822 -21.27310 -19.55351 -19.30330 -17.70330 -16.47445 -15.96346 -15.08612 -14.66401 -14.39069 -13.90429 -13.80416 -13.17634 -13.02484 -12.59422 -12.34449 -12.12456 -12.04030 -11.63859 -11.32772 -11.16527 -10.88781 -10.61493 -10.58002 -10.27442 -10.19216 -10.13791 -9.92019 -9.60378 -9.20362 -8.97783 -8.73956 -8.35942 -7.62881 -5.97185 -3.98669 2.28891 3.33986 3.40657 3.44777 4.48058 4.60897 4.75849 4.96418 5.00622 5.36263 5.39275 5.41748 5.49489 5.61469 5.61989 5.78742 5.86075 5.91757 5.96932 6.02281 6.13235 6.18333 6.20792 6.31711 6.36743 6.51683 6.60299 6.65506 6.75241 6.93217 6.95763 7.18492 7.26510 7.52482 7.69942 7.87749 7.95343 8.08187 8.49302 9.02847 9.64493 11.13009 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.049299 B = 0.005082 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.830542 B = 5507.800575 C = 5609.498965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.092 4.092 12 C 0.030 3.970 13 N -0.513 5.513 14 C 0.052 3.948 15 C -0.084 4.084 16 H 0.072 0.928 17 C -0.087 4.087 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.108 4.108 22 C 0.044 3.956 23 H 0.259 0.741 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.018 0.982 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -14.591 6.056 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.130 4.130 12 C -0.098 4.098 13 N -0.237 5.237 14 C -0.077 4.077 15 C -0.103 4.103 16 H 0.090 0.910 17 C -0.124 4.124 18 C -0.175 4.175 19 C -0.173 4.173 20 C -0.130 4.130 21 C -0.145 4.145 22 C -0.083 4.083 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.036 0.964 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.947 -14.316 6.457 15.979 hybrid contribution -0.197 0.466 -0.639 0.815 sum 2.750 -13.850 5.818 15.272 Atomic orbital electron populations 1.69972 1.05899 1.26390 1.50832 1.24979 0.94833 0.99025 0.95246 0.86623 0.79957 0.83623 0.77980 1.20825 1.21342 1.19872 1.21187 0.92716 0.90207 1.50305 0.92514 1.19488 0.92517 0.91946 0.93980 0.95351 1.22401 1.00111 0.90706 0.99822 1.23327 0.88440 0.99088 0.98903 1.64739 1.23115 1.05124 1.30682 1.22277 1.00433 0.89601 0.95380 1.21232 1.00241 0.93154 0.95632 0.90961 1.20482 1.01847 0.94759 0.95311 1.22022 1.01537 0.99238 0.94663 1.22104 1.00999 0.97012 0.97227 1.20500 1.01204 0.92738 0.98595 1.21561 0.98040 1.01871 0.93029 1.23083 1.01760 0.95398 0.88059 0.93156 0.92056 0.92467 0.95516 0.91906 0.95589 0.91489 0.91498 0.91004 0.88458 0.88543 0.91445 0.91049 0.92464 0.89781 0.96367 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 12.63 55.43 0.70 -25.13 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.01 8.37 -34.44 -0.29 -14.30 16 8 H 0.06 1.56 7.34 -52.48 -0.39 1.18 16 9 C 0.04 1.00 2.87 -90.41 -0.26 0.74 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.09 -2.17 5.76 -24.86 -0.14 -2.31 16 12 C 0.03 0.58 5.34 -1.90 -0.01 0.57 16 13 N -0.51 -9.80 4.68 -230.45 -1.08 -10.88 16 14 C 0.05 0.81 4.23 -3.82 -0.02 0.79 16 15 C -0.08 -1.13 2.03 -90.40 -0.18 -1.32 16 16 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 17 C -0.09 -0.99 5.43 -28.18 -0.15 -1.15 16 18 C -0.16 -1.70 9.80 -35.90 -0.35 -2.06 16 19 C -0.16 -1.69 9.80 -35.90 -0.35 -2.05 16 20 C -0.09 -1.08 6.12 -28.18 -0.17 -1.25 16 21 C -0.11 -1.43 5.26 -26.51 -0.14 -1.56 16 22 C 0.04 0.95 6.35 -2.75 -0.02 0.94 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.06 1.56 7.86 -51.93 -0.41 1.15 16 25 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 26 H 0.03 0.50 8.02 -51.93 -0.42 0.09 16 27 H 0.06 1.13 7.57 -51.93 -0.39 0.74 16 28 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 38 H 0.02 0.37 7.67 -51.93 -0.40 -0.03 16 39 H 0.07 1.54 7.39 -51.93 -0.38 1.16 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -28.13 302.46 -9.92 -38.05 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.90 Total: -1.73 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.18 Total: -21.35 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.38 Total: -36.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.13 -9.92 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402350310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.192 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds