Wall clock time and date at job start Mon Mar 30 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.55041 * 2 1 4 4 H 1.07997 * 119.99981 * 122.88010 * 3 2 1 5 5 C 1.37872 * 119.99692 * 302.87553 * 3 2 1 6 6 N 1.31516 * 120.00376 * 0.02562 * 5 3 2 7 7 Si 1.86808 * 119.99839 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.46935 * 60.00481 * 7 5 3 9 9 H 1.48502 * 109.47080 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47047 * 300.00045 * 7 5 3 11 11 C 1.55000 * 110.61611 * 122.87770 * 2 1 3 12 12 C 1.54811 * 102.09297 * 81.47891 * 11 2 1 13 13 C 1.54098 * 104.18743 * 20.87872 * 12 11 2 14 14 C 1.53000 * 109.88009 * 242.45318 * 13 12 11 15 15 C 1.50705 * 109.87574 * 121.45440 * 13 12 11 16 16 C 1.41386 * 126.57618 * 210.30269 * 15 13 12 17 17 C 1.34514 * 106.84076 * 180.26389 * 16 15 13 18 18 O 1.34309 * 108.41725 * 359.63410 * 17 16 15 19 19 C 1.34305 * 109.47737 * 0.37764 * 18 17 16 20 20 O 1.43744 * 107.42147 * 1.95589 * 13 12 11 21 21 H 1.08994 * 109.47121 * 311.91276 * 1 2 3 22 22 H 1.09000 * 109.46938 * 71.91602 * 1 2 3 23 23 H 1.09008 * 109.46731 * 191.91306 * 1 2 3 24 24 H 0.97003 * 120.00479 * 180.02562 * 6 5 3 25 25 H 1.09001 * 110.90490 * 323.27597 * 11 2 1 26 26 H 1.08996 * 110.93267 * 199.69288 * 11 2 1 27 27 H 1.08996 * 110.48610 * 262.20415 * 12 11 2 28 28 H 1.08997 * 110.59574 * 139.61033 * 12 11 2 29 29 H 1.08998 * 109.47326 * 292.18816 * 14 13 12 30 30 H 1.09001 * 109.46658 * 52.18678 * 14 13 12 31 31 H 1.08997 * 109.46987 * 172.18134 * 14 13 12 32 32 H 1.08005 * 126.58149 * 0.02562 * 16 15 13 33 33 H 1.07993 * 125.79271 * 179.77935 * 17 16 15 34 34 H 1.07994 * 125.78811 * 179.79209 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0590 1.4111 0.0000 4 1 2.7240 1.7385 0.7855 5 6 1.6941 2.2841 -1.0028 6 7 0.8840 1.8855 -1.9591 7 14 2.3493 4.0335 -1.0025 8 1 3.8324 4.0066 -1.0724 9 1 1.8120 4.7635 -2.1788 10 1 1.9247 4.7208 0.2436 11 6 2.0758 -0.7875 1.2184 12 6 1.9801 -2.2525 0.7270 13 6 1.9284 -2.1331 -0.8085 14 6 0.6011 -2.6883 -1.3291 15 6 3.0768 -2.8934 -1.4204 16 6 3.7392 -2.5880 -2.6316 17 6 4.6920 -3.5223 -2.8010 18 8 4.6474 -4.3677 -1.7584 19 6 3.6677 -3.9930 -0.9195 20 8 2.0365 -0.7376 -1.1356 21 1 -0.3633 0.6864 0.7647 22 1 -0.3633 0.3190 -0.9769 23 1 -0.3633 -1.0056 0.2122 24 1 0.6275 2.4996 -2.6649 25 1 1.4489 -0.6298 2.0960 26 1 3.1100 -0.5141 1.4273 27 1 1.0718 -2.7226 1.1038 28 1 2.8585 -2.8188 1.0363 29 1 0.5705 -3.7661 -1.1696 30 1 -0.2241 -2.2182 -0.7942 31 1 0.5114 -2.4759 -2.3944 32 1 3.5195 -1.7650 -3.2957 33 1 5.3781 -3.5811 -3.6329 34 1 3.4001 -4.4900 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389730607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:40 Heat of formation + Delta-G solvation = -27.008803 kcal Electronic energy + Delta-G solvation = -17531.464445 eV Core-core repulsion = 14817.402204 eV Total energy + Delta-G solvation = -2714.062242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12908 -38.78975 -33.84150 -32.24602 -31.15792 -30.31894 -28.47553 -28.00444 -25.16633 -23.18640 -21.81695 -21.00518 -19.22665 -18.82477 -17.23671 -16.30896 -15.54749 -14.78103 -14.46541 -14.22335 -13.87723 -13.58990 -13.10008 -12.43118 -12.28037 -12.04594 -11.90910 -11.60662 -11.52316 -10.91169 -10.77083 -10.65183 -10.58187 -10.28263 -10.03098 -9.76352 -9.48472 -9.14364 -8.90467 -8.50145 -8.15275 -8.01545 -5.96802 -4.11499 2.16854 3.13144 3.32580 3.37046 3.39922 3.51624 4.42411 4.89569 5.14482 5.34849 5.46359 5.61397 5.66807 5.76364 5.94027 6.06853 6.19597 6.27350 6.32404 6.52809 6.54194 6.56369 6.67857 6.78432 6.84268 6.87584 6.96288 7.06400 7.23875 7.30343 7.54364 7.78891 8.11119 8.36443 8.64465 9.00777 9.58449 11.06200 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.029689 B = 0.008531 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.892287 B = 3281.264888 C = 3658.892915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.231 3.769 3 C -0.520 4.520 4 H 0.061 0.939 5 C 0.080 3.920 6 N -0.861 5.861 7 Si 0.890 3.110 8 H -0.276 1.276 9 H -0.287 1.287 10 H -0.276 1.276 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.159 3.841 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.178 4.178 17 C -0.066 4.066 18 O -0.185 6.185 19 C -0.060 4.060 20 O -0.335 6.335 21 H 0.038 0.962 22 H 0.085 0.915 23 H 0.018 0.982 24 H 0.260 0.740 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.197 0.803 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -9.723 1.214 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.194 3.806 3 C -0.557 4.557 4 H 0.080 0.920 5 C -0.125 4.125 6 N -0.497 5.497 7 Si 0.718 3.282 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.202 1.202 11 C -0.179 4.179 12 C -0.183 4.183 13 C 0.118 3.882 14 C -0.216 4.216 15 C -0.146 4.146 16 C -0.197 4.197 17 C -0.132 4.132 18 O -0.082 6.082 19 C -0.127 4.127 20 O -0.255 6.255 21 H 0.057 0.943 22 H 0.104 0.896 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.214 0.786 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.430 -9.815 0.886 10.150 hybrid contribution 0.179 1.050 0.041 1.066 sum 2.609 -8.765 0.927 9.192 Atomic orbital electron populations 1.22305 0.98050 0.96771 1.03527 1.20040 0.90402 0.90338 0.79836 1.20852 1.30732 0.93408 1.10742 0.92048 1.25015 0.94164 0.98305 0.95023 1.69972 1.32740 1.35079 1.11953 0.86706 0.79501 0.84567 0.77457 1.20157 1.21220 1.20171 1.23161 1.01183 0.93357 1.00155 1.23058 1.00826 0.98870 0.95592 1.20080 0.89815 0.86602 0.91744 1.22460 0.97756 0.99081 1.02309 1.20589 1.00210 0.97086 0.96741 1.21793 0.97838 1.01071 0.98968 1.23907 1.03582 0.92914 0.92843 1.83995 1.46745 1.48338 1.29101 1.23654 0.92211 0.99609 0.97182 1.89336 1.83783 1.10820 1.41547 0.94320 0.89579 0.96347 0.93004 0.92215 0.91978 0.91807 0.92125 0.93659 0.91060 0.92348 0.83256 0.78637 0.78675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.55 37.16 0.28 -3.28 16 2 C 0.23 5.79 0.75 -90.71 -0.07 5.72 16 3 C -0.52 -14.43 8.33 -34.44 -0.29 -14.72 16 4 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 5 C 0.08 2.23 5.29 -17.82 -0.09 2.14 16 6 N -0.86 -24.58 11.19 55.43 0.62 -23.96 16 7 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C -0.14 -2.99 6.03 -24.72 -0.15 -3.14 16 12 C -0.15 -2.67 5.59 -25.20 -0.14 -2.81 16 13 C 0.16 3.24 1.08 -91.20 -0.10 3.14 16 14 C -0.16 -2.96 8.26 37.16 0.31 -2.66 16 15 C -0.14 -2.74 4.97 -104.74 -0.52 -3.26 16 16 C -0.18 -3.28 10.54 -39.70 -0.42 -3.70 16 17 C -0.07 -1.00 12.09 29.42 0.36 -0.64 16 18 O -0.18 -2.93 10.65 5.69 0.06 -2.86 16 19 C -0.06 -0.95 10.86 29.41 0.32 -0.63 16 20 O -0.34 -8.59 9.88 -35.23 -0.35 -8.94 16 21 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 22 H 0.09 2.27 6.42 -51.93 -0.33 1.94 16 23 H 0.02 0.38 5.07 -51.92 -0.26 0.12 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 26 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 27 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 28 H 0.06 0.99 6.29 -51.93 -0.33 0.66 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.34 5.02 -51.93 -0.26 1.08 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 33 H 0.20 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.20 2.46 7.35 -52.49 -0.39 2.07 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -30.43 274.42 -5.53 -35.96 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.46 Total: 3.24 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -0.51 Total: -23.84 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.62 Total: -23.96 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.29 Total: -11.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.43 -5.53 -35.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389730607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.951 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds