Wall clock time and date at job start Mon Mar 30 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.51996 * 2 1 4 4 C 1.53119 * 109.52738 * 120.12562 * 2 1 3 5 5 C 1.53035 * 109.28030 * 177.56327 * 4 2 1 6 6 N 1.46843 * 109.51943 * 300.81913 * 5 4 2 7 7 C 1.46903 * 110.99864 * 185.84198 * 6 5 4 8 8 C 1.53000 * 109.47174 * 67.51689 * 7 6 5 9 9 C 1.50702 * 115.54824 * 269.59456 * 8 7 6 10 10 H 1.08000 * 119.99621 * 116.33766 * 9 8 7 11 11 C 1.37868 * 120.00168 * 296.34053 * 9 8 7 12 12 N 1.31518 * 120.00301 * 2.63192 * 11 9 8 13 13 Si 1.86801 * 120.00015 * 182.63058 * 11 9 8 14 14 H 1.48497 * 109.47142 * 90.00059 * 13 11 9 15 15 H 1.48503 * 109.47388 * 209.99995 * 13 11 9 16 16 H 1.48497 * 109.47066 * 329.99770 * 13 11 9 17 17 C 1.53006 * 117.49827 * 123.89106 * 8 7 6 18 18 C 1.53000 * 117.49947 * 55.26712 * 8 7 6 19 19 C 1.46845 * 111.20178 * 61.74412 * 6 5 4 20 20 H 1.09005 * 109.46290 * 58.27307 * 19 6 5 21 21 C 1.53003 * 109.46483 * 178.24040 * 19 6 5 22 22 C 1.53036 * 109.52357 * 298.25891 * 19 6 5 23 23 H 1.09001 * 109.46809 * 299.87542 * 1 2 3 24 24 H 1.08999 * 109.47067 * 59.87429 * 1 2 3 25 25 H 1.09002 * 109.46474 * 179.87742 * 1 2 3 26 26 H 1.08997 * 109.50421 * 57.61753 * 4 2 1 27 27 H 1.09003 * 109.53242 * 297.52154 * 4 2 1 28 28 H 1.09000 * 109.46404 * 180.80645 * 5 4 2 29 29 H 1.08997 * 109.45530 * 60.83092 * 5 4 2 30 30 H 1.08998 * 109.47338 * 187.51771 * 7 6 5 31 31 H 1.08995 * 109.47254 * 307.51630 * 7 6 5 32 32 H 0.97002 * 119.99807 * 185.02047 * 12 11 9 33 33 H 1.08998 * 117.49467 * 359.97438 * 17 8 7 34 34 H 1.09000 * 117.49888 * 145.02244 * 17 8 7 35 35 H 1.08997 * 117.49871 * 214.97906 * 18 8 7 36 36 H 1.08999 * 117.49766 * 0.02562 * 18 8 7 37 37 H 1.08994 * 109.46993 * 51.96222 * 21 19 6 38 38 H 1.08997 * 109.47160 * 171.96463 * 21 19 6 39 39 H 1.09005 * 109.46996 * 291.96004 * 21 19 6 40 40 H 1.09006 * 109.50285 * 299.23330 * 22 19 6 41 41 H 1.08995 * 109.50618 * 179.11794 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0418 -0.7243 1.2482 5 6 3.5709 -0.7743 1.2120 6 7 4.0103 -1.4787 0.0008 7 6 5.4671 -1.6676 0.0009 8 6 5.8547 -2.6448 1.1125 9 6 6.1632 -2.0199 2.4488 10 1 5.5436 -2.2425 3.3049 11 6 7.2364 -1.1642 2.5783 12 7 7.9597 -0.8524 1.5251 13 14 7.6630 -0.4474 4.2497 14 1 8.6157 -1.3487 4.9463 15 1 8.2861 0.8887 4.0710 16 1 6.4263 -0.3122 5.0606 17 6 6.6503 -3.8893 0.7135 18 6 5.1791 -4.0175 1.1137 19 6 3.5709 -0.7758 -1.2113 20 1 3.9675 0.2396 -1.2062 21 6 4.0860 -1.5179 -2.4461 22 6 2.0417 -0.7257 -1.2474 23 1 -0.3633 0.5119 0.8911 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3632 -1.0277 -0.0022 26 1 1.6449 -1.7392 1.2685 27 1 1.7163 -0.1883 2.1398 28 1 3.9380 -1.3020 2.0923 29 1 3.9673 0.2410 1.2057 30 1 5.7815 -2.0697 -0.9622 31 1 5.9577 -0.7094 0.1721 32 1 8.7570 -0.3094 1.6278 33 1 6.8972 -4.0120 -0.3411 34 1 7.3972 -4.2563 1.4175 35 1 4.9581 -4.4689 2.0808 36 1 4.4589 -4.2246 0.3222 37 1 3.8093 -2.5700 -2.3794 38 1 3.6444 -1.0822 -3.3423 39 1 5.1713 -1.4300 -2.4963 40 1 1.6447 -1.7407 -1.2665 41 1 1.7161 -0.1902 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227686871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:24 Heat of formation + Delta-G solvation = 7.654083 kcal Electronic energy + Delta-G solvation = -18194.032693 eV Core-core repulsion = 15687.713825 eV Total energy + Delta-G solvation = -2506.318868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.93687 -36.35000 -33.75381 -31.98316 -31.65655 -28.19988 -26.38908 -25.66545 -24.21232 -21.98212 -20.97743 -20.16610 -19.21195 -18.61461 -16.07180 -15.11144 -14.77706 -14.52559 -14.18666 -13.90533 -13.75141 -13.23717 -12.60710 -12.48481 -12.24979 -11.86692 -11.67114 -11.44411 -11.37993 -11.07387 -11.02607 -10.84494 -10.76799 -10.46221 -10.37869 -10.20252 -10.09714 -9.67789 -9.59776 -9.32402 -8.62078 -8.45394 -8.00904 -7.26663 -6.01070 -4.05010 3.28837 3.36277 3.38727 4.41257 4.69418 5.06063 5.15115 5.18796 5.25033 5.57523 5.61547 5.71145 5.82529 5.86591 5.88344 6.00999 6.03617 6.10423 6.16487 6.28341 6.29746 6.41929 6.43975 6.52617 6.58281 6.61392 6.66743 6.69114 6.87813 6.93957 6.97034 7.08686 7.19399 7.25320 7.55031 7.65645 7.89994 8.17428 8.21730 8.52666 8.95450 9.57649 11.06397 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.008458 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.739349 B = 3309.658199 C = 3812.112779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.061 0.939 4 C -0.111 4.111 5 C 0.060 3.940 6 N -0.526 5.526 7 C 0.097 3.903 8 C 0.058 3.942 9 C -0.487 4.487 10 H 0.058 0.942 11 C 0.070 3.930 12 N -0.881 5.881 13 Si 0.884 3.116 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.273 1.273 17 C -0.186 4.186 18 C -0.190 4.190 19 C 0.078 3.922 20 H 0.028 0.972 21 C -0.144 4.144 22 C -0.100 4.100 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.259 0.741 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 1.175 -4.723 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.067 4.067 6 N -0.251 5.251 7 C -0.029 4.029 8 C 0.057 3.943 9 C -0.524 4.524 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.518 5.518 13 Si 0.712 3.288 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.225 4.225 18 C -0.227 4.227 19 C -0.031 4.031 20 H 0.046 0.954 21 C -0.201 4.201 22 C -0.138 4.138 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.255 0.896 -4.797 11.357 hybrid contribution 0.874 1.204 0.861 1.719 sum -9.381 2.100 -3.936 10.387 Atomic orbital electron populations 1.21806 0.95862 1.01470 1.00893 1.21198 0.94788 0.99252 0.96135 0.92060 1.21689 0.96765 1.00300 0.96118 1.22105 0.92892 0.96618 0.95129 1.62026 1.14930 1.47881 1.00279 1.21705 0.84092 1.00382 0.96753 1.18765 0.96367 0.84696 0.94479 1.20542 1.12662 1.25775 0.93463 0.92371 1.24953 0.96582 0.95650 0.96093 1.69961 1.15850 1.37798 1.28207 0.86715 0.78752 0.78502 0.84844 1.20689 1.21353 1.19797 1.22791 0.93252 1.08119 0.98299 1.22681 0.94511 1.05314 1.00209 1.21534 0.94493 0.95399 0.91648 0.95371 1.21880 1.01083 1.01003 0.96179 1.21633 0.95077 1.00594 0.96511 0.93113 0.93321 0.92809 0.91633 0.92588 0.88101 0.96227 0.93504 0.92707 0.93106 0.92173 0.90832 0.91361 0.90992 0.92041 0.93274 0.92444 0.91477 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 37.16 0.34 -1.31 16 2 C -0.10 -1.34 2.79 -90.50 -0.25 -1.59 16 3 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 4 C -0.11 -1.77 5.38 -26.65 -0.14 -1.91 16 5 C 0.06 1.20 5.16 -3.84 -0.02 1.18 16 6 N -0.53 -10.44 4.27 -226.69 -0.97 -11.41 16 7 C 0.10 2.24 4.53 -3.82 -0.02 2.22 16 8 C 0.06 1.41 1.10 -155.66 -0.17 1.24 16 9 C -0.49 -12.95 6.95 -34.44 -0.24 -13.19 16 10 H 0.06 1.56 7.70 -52.49 -0.40 1.15 16 11 C 0.07 1.88 5.31 -17.82 -0.09 1.79 16 12 N -0.88 -24.67 12.05 55.43 0.67 -24.00 16 13 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 C -0.19 -4.39 9.88 -26.72 -0.26 -4.66 16 18 C -0.19 -4.22 9.73 -26.73 -0.26 -4.48 16 19 C 0.08 1.33 2.44 -67.72 -0.17 1.17 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.14 -2.24 8.52 37.16 0.32 -1.92 16 22 C -0.10 -1.44 4.65 -26.65 -0.12 -1.57 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 2.26 5.67 -51.93 -0.29 1.96 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 1.05 5.49 -51.93 -0.28 0.77 16 31 H 0.05 1.44 6.78 -51.93 -0.35 1.09 16 32 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 33 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 34 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.06 0.95 6.57 -51.93 -0.34 0.61 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -26.89 313.49 -9.26 -36.15 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.57 Total: 1.65 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -1.09 Total: -23.04 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.30 Total: -35.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.89 -9.26 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227686871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.807 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds