Wall clock time and date at job start Mon Mar 30 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.51996 * 2 1 4 4 C 1.53119 * 109.52738 * 120.12562 * 2 1 3 5 5 C 1.53035 * 109.28030 * 177.56327 * 4 2 1 6 6 N 1.46843 * 109.51943 * 300.81913 * 5 4 2 7 7 C 1.46903 * 110.99864 * 185.84198 * 6 5 4 8 8 C 1.53000 * 109.47174 * 67.51689 * 7 6 5 9 9 C 1.50702 * 115.54824 * 269.59456 * 8 7 6 10 10 H 1.08000 * 119.99621 * 116.33766 * 9 8 7 11 11 C 1.37868 * 120.00168 * 296.34053 * 9 8 7 12 12 N 1.31518 * 120.00301 * 2.63192 * 11 9 8 13 13 Si 1.86801 * 120.00015 * 182.63058 * 11 9 8 14 14 H 1.48497 * 109.47142 * 90.00059 * 13 11 9 15 15 H 1.48503 * 109.47388 * 209.99995 * 13 11 9 16 16 H 1.48497 * 109.47066 * 329.99770 * 13 11 9 17 17 C 1.53006 * 117.49827 * 123.89106 * 8 7 6 18 18 C 1.53000 * 117.49947 * 55.26712 * 8 7 6 19 19 C 1.46845 * 111.20178 * 61.74412 * 6 5 4 20 20 H 1.09005 * 109.46290 * 58.27307 * 19 6 5 21 21 C 1.53003 * 109.46483 * 178.24040 * 19 6 5 22 22 C 1.53036 * 109.52357 * 298.25891 * 19 6 5 23 23 H 1.09001 * 109.46809 * 299.87542 * 1 2 3 24 24 H 1.08999 * 109.47067 * 59.87429 * 1 2 3 25 25 H 1.09002 * 109.46474 * 179.87742 * 1 2 3 26 26 H 1.08997 * 109.50421 * 57.61753 * 4 2 1 27 27 H 1.09003 * 109.53242 * 297.52154 * 4 2 1 28 28 H 1.09000 * 109.46404 * 180.80645 * 5 4 2 29 29 H 1.08997 * 109.45530 * 60.83092 * 5 4 2 30 30 H 1.08998 * 109.47338 * 187.51771 * 7 6 5 31 31 H 1.08995 * 109.47254 * 307.51630 * 7 6 5 32 32 H 0.97002 * 119.99807 * 185.02047 * 12 11 9 33 33 H 1.08998 * 117.49467 * 359.97438 * 17 8 7 34 34 H 1.09000 * 117.49888 * 145.02244 * 17 8 7 35 35 H 1.08997 * 117.49871 * 214.97906 * 18 8 7 36 36 H 1.08999 * 117.49766 * 0.02562 * 18 8 7 37 37 H 1.08994 * 109.46993 * 51.96222 * 21 19 6 38 38 H 1.08997 * 109.47160 * 171.96463 * 21 19 6 39 39 H 1.09005 * 109.46996 * 291.96004 * 21 19 6 40 40 H 1.09006 * 109.50285 * 299.23330 * 22 19 6 41 41 H 1.08995 * 109.50618 * 179.11794 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0418 -0.7243 1.2482 5 6 3.5709 -0.7743 1.2120 6 7 4.0103 -1.4787 0.0008 7 6 5.4671 -1.6676 0.0009 8 6 5.8547 -2.6448 1.1125 9 6 6.1632 -2.0199 2.4488 10 1 5.5436 -2.2425 3.3049 11 6 7.2364 -1.1642 2.5783 12 7 7.9597 -0.8524 1.5251 13 14 7.6630 -0.4474 4.2497 14 1 8.6157 -1.3487 4.9463 15 1 8.2861 0.8887 4.0710 16 1 6.4263 -0.3122 5.0606 17 6 6.6503 -3.8893 0.7135 18 6 5.1791 -4.0175 1.1137 19 6 3.5709 -0.7758 -1.2113 20 1 3.9675 0.2396 -1.2062 21 6 4.0860 -1.5179 -2.4461 22 6 2.0417 -0.7257 -1.2474 23 1 -0.3633 0.5119 0.8911 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3632 -1.0277 -0.0022 26 1 1.6449 -1.7392 1.2685 27 1 1.7163 -0.1883 2.1398 28 1 3.9380 -1.3020 2.0923 29 1 3.9673 0.2410 1.2057 30 1 5.7815 -2.0697 -0.9622 31 1 5.9577 -0.7094 0.1721 32 1 8.7570 -0.3094 1.6278 33 1 6.8972 -4.0120 -0.3411 34 1 7.3972 -4.2563 1.4175 35 1 4.9581 -4.4689 2.0808 36 1 4.4589 -4.2246 0.3222 37 1 3.8093 -2.5700 -2.3794 38 1 3.6444 -1.0822 -3.3423 39 1 5.1713 -1.4300 -2.4963 40 1 1.6447 -1.7407 -1.2665 41 1 1.7161 -0.1902 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227686871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:24 Heat of formation + Delta-G solvation = -6.025136 kcal Electronic energy + Delta-G solvation = -18194.625868 eV Core-core repulsion = 15687.713825 eV Total energy + Delta-G solvation = -2506.912044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41374 -38.08894 -35.11875 -34.04340 -33.08178 -29.56840 -27.72220 -27.59132 -25.78390 -23.45510 -22.82269 -21.51825 -20.70297 -20.34089 -18.05371 -16.70025 -16.52023 -16.05689 -15.84244 -15.39200 -15.04636 -14.84036 -14.32553 -13.78200 -13.60488 -13.29265 -13.21065 -12.95766 -12.80983 -12.76115 -12.60055 -12.41810 -12.36924 -12.20813 -11.96279 -11.80595 -11.45631 -11.25785 -11.03913 -10.93493 -10.56804 -10.44417 -9.90972 -8.95653 -8.08439 -6.17121 1.38044 1.40184 1.48396 2.41720 3.12438 3.17350 3.74224 3.91225 3.99098 4.01035 4.23753 4.38964 4.47869 4.56500 4.62068 4.69632 4.76324 4.79404 4.84676 4.87521 4.94003 5.00206 5.05684 5.08409 5.13201 5.18295 5.23105 5.26896 5.31600 5.33818 5.39895 5.46318 5.50519 5.64769 5.67969 5.68793 5.90399 6.43185 6.48594 6.61187 6.89998 7.47318 8.98173 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.008458 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.739349 B = 3309.658199 C = 3812.112779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.054 0.946 4 C -0.103 4.103 5 C 0.064 3.936 6 N -0.522 5.522 7 C 0.114 3.886 8 C 0.033 3.967 9 C -0.494 4.494 10 H 0.050 0.950 11 C 0.025 3.975 12 N -0.908 5.908 13 Si 0.940 3.060 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.191 4.191 18 C -0.164 4.164 19 C 0.071 3.929 20 H 0.011 0.989 21 C -0.138 4.138 22 C -0.093 4.093 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.070 0.930 29 H -0.005 1.005 30 H 0.049 0.951 31 H 0.013 0.987 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 1.067 -5.283 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.064 4.064 6 N -0.247 5.247 7 C -0.014 4.014 8 C 0.032 3.968 9 C -0.532 4.532 10 H 0.068 0.932 11 C -0.175 4.175 12 N -0.547 5.547 13 Si 0.767 3.233 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.192 1.192 17 C -0.229 4.229 18 C -0.202 4.202 19 C -0.037 4.037 20 H 0.029 0.971 21 C -0.196 4.196 22 C -0.130 4.130 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.014 0.986 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.392 0.780 -5.353 13.521 hybrid contribution 1.536 1.234 1.023 2.220 sum -10.856 2.014 -4.330 11.860 Atomic orbital electron populations 1.21732 0.93268 1.02199 1.02090 1.21190 0.96861 0.98417 0.94797 0.92716 1.21626 0.93409 1.01037 0.97988 1.22008 0.95762 0.94565 0.94104 1.62064 1.12602 1.48473 1.01524 1.21371 0.85928 0.97878 0.96175 1.18866 0.97950 0.85701 0.94266 1.20749 1.12408 1.25784 0.94217 0.93204 1.25592 0.96711 0.96139 0.99041 1.70078 1.16200 1.38624 1.29789 0.85819 0.78556 0.77669 0.81284 1.20267 1.21365 1.19217 1.22764 0.93863 1.07765 0.98546 1.22632 0.93781 1.03096 1.00646 1.21736 0.96782 0.94334 0.90876 0.97103 1.21835 1.00029 1.01068 0.96638 1.21608 0.92367 1.01289 0.97780 0.92429 0.91722 0.92286 0.91369 0.91492 0.91116 0.98632 0.93312 0.96820 0.93332 0.91177 0.92213 0.91162 0.89418 0.91942 0.90230 0.94301 0.91075 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.20 71.98 0.66 -1.97 16 2 C -0.09 -2.42 2.79 -10.71 -0.03 -2.45 16 3 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.10 -3.14 5.38 30.65 0.16 -2.98 16 5 C 0.06 2.57 5.16 86.33 0.45 3.01 16 6 N -0.52 -20.71 4.27 -871.12 -3.72 -24.43 16 7 C 0.11 5.38 4.53 86.30 0.39 5.77 16 8 C 0.03 1.63 1.10 -52.93 -0.06 1.57 16 9 C -0.49 -26.86 6.95 25.60 0.18 -26.68 16 10 H 0.05 2.72 7.70 -2.91 -0.02 2.70 16 11 C 0.02 1.37 5.31 84.65 0.45 1.81 16 12 N -0.91 -52.34 12.05 21.44 0.26 -52.08 16 13 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C -0.19 -9.04 9.88 30.60 0.30 -8.74 16 18 C -0.16 -7.19 9.73 30.60 0.30 -6.89 16 19 C 0.07 2.36 2.44 44.94 0.11 2.47 16 20 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 21 C -0.14 -4.08 8.52 71.98 0.61 -3.46 16 22 C -0.09 -2.40 4.65 30.65 0.14 -2.26 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.07 3.25 5.67 -2.39 -0.01 3.24 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.05 2.23 5.49 -2.39 -0.01 2.22 16 31 H 0.01 0.75 6.78 -2.39 -0.02 0.73 16 32 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 33 H 0.07 3.13 8.03 -2.39 -0.02 3.11 16 34 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 39 H 0.04 1.27 6.57 -2.38 -0.02 1.25 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -58.55 313.49 3.19 -55.35 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.96 Total: 16.17 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.67 Total: -40.80 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -3.46 Total: -76.51 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -58.55 3.19 -55.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227686871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.328 kcal (2) G-P(sol) polarization free energy of solvation -58.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds