Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.43229 * 2 1 4 4 C 1.54890 * 110.48312 * 237.46489 * 2 1 3 5 5 C 1.54890 * 102.74908 * 203.38025 * 4 2 1 6 6 C 1.54266 * 104.19411 * 37.93751 * 5 4 2 7 7 H 1.09002 * 110.02903 * 95.67990 * 6 5 4 8 8 N 1.46896 * 110.03286 * 217.05727 * 6 5 4 9 9 C 1.46901 * 111.00556 * 283.90102 * 8 6 5 10 10 C 1.53000 * 109.47516 * 183.68364 * 9 8 6 11 11 C 1.50702 * 115.54633 * 280.02216 * 10 9 8 12 12 H 1.08003 * 119.99755 * 144.05510 * 11 10 9 13 13 C 1.37872 * 120.00339 * 324.05200 * 11 10 9 14 14 N 1.31516 * 120.00017 * 338.36671 * 13 11 10 15 15 Si 1.86800 * 120.00311 * 158.36516 * 13 11 10 16 16 H 1.48500 * 109.46905 * 60.00086 * 15 13 11 17 17 H 1.48500 * 109.47428 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46947 * 300.00387 * 15 13 11 19 19 C 1.53001 * 117.49996 * 134.31494 * 10 9 8 20 20 C 1.52997 * 117.49823 * 65.68874 * 10 9 8 21 21 C 1.53871 * 106.60168 * 336.39335 * 6 5 4 22 22 H 1.09004 * 110.02850 * 119.27919 * 21 6 5 23 23 C 1.52998 * 110.03307 * 240.71084 * 21 6 5 24 24 H 1.09002 * 109.47405 * 181.08562 * 1 2 3 25 25 H 1.08997 * 109.47111 * 301.08260 * 1 2 3 26 26 H 1.08998 * 109.47258 * 61.08153 * 1 2 3 27 27 H 1.09007 * 110.75664 * 321.69391 * 4 2 1 28 28 H 1.08997 * 110.75805 * 85.06040 * 4 2 1 29 29 H 1.08994 * 110.49028 * 156.61941 * 5 4 2 30 30 H 1.09003 * 110.48012 * 279.26585 * 5 4 2 31 31 H 1.00900 * 111.00412 * 159.95075 * 8 6 5 32 32 H 1.08993 * 109.46989 * 303.68667 * 9 8 6 33 33 H 1.09003 * 109.46620 * 63.68145 * 9 8 6 34 34 H 0.97006 * 120.00012 * 185.03205 * 14 13 11 35 35 H 1.08999 * 117.49508 * 359.97438 * 19 10 9 36 36 H 1.08997 * 117.49737 * 145.01780 * 19 10 9 37 37 H 1.08998 * 117.50174 * 214.97699 * 20 10 9 38 38 H 1.09003 * 117.49686 * 0.02562 * 20 10 9 39 39 H 1.09005 * 109.46720 * 171.40035 * 23 21 6 40 40 H 1.08992 * 109.47110 * 291.39849 * 23 21 6 41 41 H 1.09001 * 109.47167 * 51.40006 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 -1.2233 5 6 3.4907 -1.1970 -0.7617 6 6 3.3165 -1.5415 0.7319 7 1 3.1692 -2.6147 0.8528 8 7 4.4980 -1.1077 1.4894 9 6 5.6260 -2.0243 1.2761 10 6 6.8058 -1.5932 2.1498 11 6 7.6266 -0.4482 1.6146 12 1 8.0458 0.2794 2.2938 13 6 7.8424 -0.3296 0.2580 14 7 7.7228 -1.3821 -0.5214 15 14 8.3047 1.3261 -0.4730 16 1 9.5745 1.7984 0.1350 17 1 8.4796 1.1876 -1.9411 18 1 7.2268 2.3087 -0.1938 19 6 7.5394 -2.6830 2.9341 20 6 6.6340 -1.6908 3.6669 21 6 2.0700 -0.7804 1.2162 22 1 1.3176 -1.4844 1.5720 23 6 2.4508 0.1909 2.3353 24 1 -0.3634 -1.0275 0.0195 25 1 -0.3633 0.5305 0.8801 26 1 -0.3634 0.4969 -0.8995 27 1 1.4579 -1.6582 -1.4245 28 1 2.1250 -0.1354 -2.1004 29 1 3.8315 -2.0705 -1.3174 30 1 4.1897 -0.3695 -0.8834 31 1 4.2852 -1.0188 2.4717 32 1 5.3265 -3.0374 1.5441 33 1 5.9219 -1.9982 0.2273 34 1 7.9452 -1.3160 -1.4633 35 1 7.1812 -3.7070 2.8279 36 1 8.6160 -2.5720 3.0630 37 1 7.1152 -0.9272 4.2781 38 1 5.6807 -2.0625 4.0426 39 1 1.5992 0.8310 2.5661 40 1 2.7336 -0.3723 3.2245 41 1 3.2907 0.8060 2.0123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252111573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = 10.636468 kcal Electronic energy + Delta-G solvation = -17938.938859 eV Core-core repulsion = 15432.749317 eV Total energy + Delta-G solvation = -2506.189542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.93645 -36.69081 -33.39575 -32.08204 -30.96943 -29.48311 -25.81320 -25.11824 -23.61876 -23.36601 -21.06971 -20.01757 -18.86752 -18.42735 -16.31355 -15.27352 -14.78596 -14.72826 -14.48717 -13.68710 -13.58181 -13.22075 -13.02433 -12.72403 -12.24089 -11.91887 -11.58797 -11.45200 -11.22869 -10.89351 -10.75610 -10.62082 -10.44899 -10.41386 -10.29917 -10.23973 -10.18281 -10.12580 -9.93923 -9.09129 -9.07321 -8.62098 -7.90380 -7.31057 -5.98989 -3.91502 3.36410 3.41719 3.48400 4.47363 4.83388 4.88558 4.91623 5.06563 5.25468 5.58557 5.60780 5.63791 5.68234 5.75291 5.83118 5.93489 5.96854 5.99276 6.11416 6.16630 6.24639 6.30534 6.37768 6.44685 6.48072 6.58453 6.62511 6.70443 6.73200 6.82072 6.83674 6.91878 7.03092 7.20481 7.39764 7.74386 8.10888 8.21525 8.39553 8.62468 8.99212 9.63413 11.05240 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.008510 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.391389 B = 3289.559829 C = 3925.724143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.088 3.912 7 H 0.026 0.974 8 N -0.665 5.665 9 C 0.087 3.913 10 C 0.066 3.934 11 C -0.482 4.482 12 H 0.057 0.943 13 C 0.082 3.918 14 N -0.872 5.872 15 Si 0.885 3.115 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.273 1.273 19 C -0.206 4.206 20 C -0.214 4.214 21 C -0.088 4.088 22 H 0.061 0.939 23 C -0.142 4.142 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.327 0.673 32 H -0.014 1.014 33 H 0.122 0.878 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 0.716 0.526 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.148 4.148 6 C -0.022 4.022 7 H 0.044 0.956 8 N -0.297 5.297 9 C -0.041 4.041 10 C 0.065 3.935 11 C -0.518 4.518 12 H 0.075 0.925 13 C -0.121 4.121 14 N -0.509 5.509 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.245 4.245 20 C -0.252 4.252 21 C -0.107 4.107 22 H 0.080 0.920 23 C -0.200 4.200 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.004 0.996 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.785 1.110 -0.166 11.838 hybrid contribution 0.049 -0.120 0.268 0.298 sum -11.736 0.991 0.102 11.778 Atomic orbital electron populations 1.21806 0.95755 1.01273 1.01071 1.21982 0.94421 0.99640 0.94757 0.90569 1.22541 0.96947 0.99167 0.97136 1.22357 0.96063 1.01808 0.94576 1.22054 0.90176 0.95334 0.94652 0.95617 1.60765 1.04469 1.51505 1.13008 1.21840 0.88359 0.88580 1.05363 1.18932 0.93989 0.94584 0.85960 1.20321 1.31750 1.08282 0.91470 0.92483 1.24824 0.94443 0.95898 0.96935 1.69876 1.46876 1.28050 1.06130 0.86782 0.78696 0.85530 0.77702 1.20617 1.21515 1.19889 1.22992 0.97334 0.94137 1.10023 1.22814 0.99484 1.03448 0.99451 1.21874 0.96300 0.96952 0.95542 0.92044 1.21772 1.01570 0.99242 0.97385 0.93021 0.93051 0.93068 0.92212 0.92078 0.92478 0.90010 0.85293 0.99592 0.86008 0.92913 0.92152 0.90491 0.90761 0.92086 0.93837 0.93320 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.12 37.16 0.34 -1.21 16 2 C -0.09 -1.20 2.99 -88.96 -0.27 -1.46 16 3 H 0.08 1.08 7.86 -51.93 -0.41 0.67 16 4 C -0.12 -1.68 6.33 -24.74 -0.16 -1.83 16 5 C -0.11 -1.92 5.95 -25.07 -0.15 -2.07 16 6 C 0.09 1.55 3.20 -66.60 -0.21 1.34 16 7 H 0.03 0.47 7.96 -51.93 -0.41 0.05 16 8 N -0.67 -13.60 5.18 -105.55 -0.55 -14.14 16 9 C 0.09 2.04 5.19 -3.82 -0.02 2.02 16 10 C 0.07 1.65 1.92 -155.66 -0.30 1.35 16 11 C -0.48 -13.23 8.98 -34.44 -0.31 -13.54 16 12 H 0.06 1.58 7.91 -52.48 -0.41 1.17 16 13 C 0.08 2.24 5.04 -17.82 -0.09 2.15 16 14 N -0.87 -24.21 11.13 55.43 0.62 -23.60 16 15 Si 0.89 21.28 29.59 -169.99 -5.03 16.25 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.21 -4.85 9.88 -26.73 -0.26 -5.11 16 20 C -0.21 -4.73 9.45 -26.73 -0.25 -4.99 16 21 C -0.09 -1.28 3.07 -89.51 -0.27 -1.55 16 22 H 0.06 0.83 7.81 -51.93 -0.41 0.43 16 23 C -0.14 -2.05 7.79 37.16 0.29 -1.76 16 24 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.66 8.05 -51.93 -0.42 1.24 16 31 H 0.33 6.37 5.69 -39.29 -0.22 6.14 16 32 H -0.01 -0.33 7.84 -51.93 -0.41 -0.73 16 33 H 0.12 3.20 5.07 -51.93 -0.26 2.94 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 36 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.69 7.17 -51.93 -0.37 0.31 16 41 H 0.08 1.34 7.38 -51.93 -0.38 0.96 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -27.15 316.46 -9.34 -36.49 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.48 Total: 6.91 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -1.67 Total: -26.67 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.07 Total: -37.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.15 -9.34 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252111573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.125 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds