Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.43229 * 2 1 4 4 C 1.54890 * 110.48312 * 237.46489 * 2 1 3 5 5 C 1.54890 * 102.74908 * 203.38025 * 4 2 1 6 6 C 1.54266 * 104.19411 * 37.93751 * 5 4 2 7 7 H 1.09002 * 110.02903 * 95.67990 * 6 5 4 8 8 N 1.46896 * 110.03286 * 217.05727 * 6 5 4 9 9 C 1.46901 * 111.00556 * 283.90102 * 8 6 5 10 10 C 1.53000 * 109.47516 * 183.68364 * 9 8 6 11 11 C 1.50702 * 115.54633 * 280.02216 * 10 9 8 12 12 H 1.08003 * 119.99755 * 144.05510 * 11 10 9 13 13 C 1.37872 * 120.00339 * 324.05200 * 11 10 9 14 14 N 1.31516 * 120.00017 * 338.36671 * 13 11 10 15 15 Si 1.86800 * 120.00311 * 158.36516 * 13 11 10 16 16 H 1.48500 * 109.46905 * 60.00086 * 15 13 11 17 17 H 1.48500 * 109.47428 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46947 * 300.00387 * 15 13 11 19 19 C 1.53001 * 117.49996 * 134.31494 * 10 9 8 20 20 C 1.52997 * 117.49823 * 65.68874 * 10 9 8 21 21 C 1.53871 * 106.60168 * 336.39335 * 6 5 4 22 22 H 1.09004 * 110.02850 * 119.27919 * 21 6 5 23 23 C 1.52998 * 110.03307 * 240.71084 * 21 6 5 24 24 H 1.09002 * 109.47405 * 181.08562 * 1 2 3 25 25 H 1.08997 * 109.47111 * 301.08260 * 1 2 3 26 26 H 1.08998 * 109.47258 * 61.08153 * 1 2 3 27 27 H 1.09007 * 110.75664 * 321.69391 * 4 2 1 28 28 H 1.08997 * 110.75805 * 85.06040 * 4 2 1 29 29 H 1.08994 * 110.49028 * 156.61941 * 5 4 2 30 30 H 1.09003 * 110.48012 * 279.26585 * 5 4 2 31 31 H 1.00900 * 111.00412 * 159.95075 * 8 6 5 32 32 H 1.08993 * 109.46989 * 303.68667 * 9 8 6 33 33 H 1.09003 * 109.46620 * 63.68145 * 9 8 6 34 34 H 0.97006 * 120.00012 * 185.03205 * 14 13 11 35 35 H 1.08999 * 117.49508 * 359.97438 * 19 10 9 36 36 H 1.08997 * 117.49737 * 145.01780 * 19 10 9 37 37 H 1.08998 * 117.50174 * 214.97699 * 20 10 9 38 38 H 1.09003 * 117.49686 * 0.02562 * 20 10 9 39 39 H 1.09005 * 109.46720 * 171.40035 * 23 21 6 40 40 H 1.08992 * 109.47110 * 291.39849 * 23 21 6 41 41 H 1.09001 * 109.47167 * 51.40006 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 -1.2233 5 6 3.4907 -1.1970 -0.7617 6 6 3.3165 -1.5415 0.7319 7 1 3.1692 -2.6147 0.8528 8 7 4.4980 -1.1077 1.4894 9 6 5.6260 -2.0243 1.2761 10 6 6.8058 -1.5932 2.1498 11 6 7.6266 -0.4482 1.6146 12 1 8.0458 0.2794 2.2938 13 6 7.8424 -0.3296 0.2580 14 7 7.7228 -1.3821 -0.5214 15 14 8.3047 1.3261 -0.4730 16 1 9.5745 1.7984 0.1350 17 1 8.4796 1.1876 -1.9411 18 1 7.2268 2.3087 -0.1938 19 6 7.5394 -2.6830 2.9341 20 6 6.6340 -1.6908 3.6669 21 6 2.0700 -0.7804 1.2162 22 1 1.3176 -1.4844 1.5720 23 6 2.4508 0.1909 2.3353 24 1 -0.3634 -1.0275 0.0195 25 1 -0.3633 0.5305 0.8801 26 1 -0.3634 0.4969 -0.8995 27 1 1.4579 -1.6582 -1.4245 28 1 2.1250 -0.1354 -2.1004 29 1 3.8315 -2.0705 -1.3174 30 1 4.1897 -0.3695 -0.8834 31 1 4.2852 -1.0188 2.4717 32 1 5.3265 -3.0374 1.5441 33 1 5.9219 -1.9982 0.2273 34 1 7.9452 -1.3160 -1.4633 35 1 7.1812 -3.7070 2.8279 36 1 8.6160 -2.5720 3.0630 37 1 7.1152 -0.9272 4.2781 38 1 5.6807 -2.0625 4.0426 39 1 1.5992 0.8310 2.5661 40 1 2.7336 -0.3723 3.2245 41 1 3.2907 0.8060 2.0123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252111573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -2.805939 kcal Electronic energy + Delta-G solvation = -17939.521766 eV Core-core repulsion = 15432.749317 eV Total energy + Delta-G solvation = -2506.772449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26200 -38.47551 -34.86128 -34.15671 -32.19998 -30.73327 -27.72155 -26.65507 -25.14195 -24.59974 -22.90394 -21.23786 -20.78659 -19.75270 -18.22185 -16.75455 -16.51678 -16.36319 -15.94130 -15.29422 -14.87377 -14.76861 -14.64440 -13.92572 -13.54133 -13.38289 -13.17022 -12.92961 -12.79170 -12.60345 -12.48302 -12.27412 -12.11323 -12.03652 -11.70596 -11.60038 -11.46009 -11.37124 -11.22094 -11.02355 -10.89653 -10.54579 -9.89729 -8.95483 -8.06652 -6.04655 1.41194 1.46539 1.53094 2.45796 3.02424 3.43687 3.67908 3.72559 3.76804 4.03847 4.34100 4.42666 4.48656 4.50591 4.57508 4.66158 4.68562 4.73563 4.77841 4.83632 4.88474 4.92299 4.94997 5.03895 5.07714 5.14185 5.21506 5.27841 5.30801 5.34976 5.39148 5.49628 5.53910 5.57013 5.67196 5.71093 6.12984 6.45029 6.55593 6.88918 6.90860 7.51933 8.96173 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.008510 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.391389 B = 3289.559829 C = 3925.724143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.084 3.916 7 H 0.022 0.978 8 N -0.670 5.670 9 C 0.100 3.900 10 C 0.035 3.965 11 C -0.502 4.502 12 H 0.045 0.955 13 C 0.044 3.956 14 N -0.893 5.893 15 Si 0.938 3.062 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.210 4.210 20 C -0.188 4.188 21 C -0.082 4.082 22 H 0.080 0.920 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.333 0.667 32 H -0.017 1.017 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 1.169 0.993 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.027 4.027 7 H 0.040 0.960 8 N -0.303 5.303 9 C -0.029 4.029 10 C 0.034 3.966 11 C -0.539 4.539 12 H 0.064 0.936 13 C -0.157 4.157 14 N -0.530 5.530 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.249 4.249 20 C -0.225 4.225 21 C -0.101 4.101 22 H 0.099 0.901 23 C -0.195 4.195 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.001 0.999 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.829 1.567 0.312 13.921 hybrid contribution 0.717 -0.288 0.138 0.785 sum -13.112 1.278 0.450 13.182 Atomic orbital electron populations 1.21753 0.93233 1.02158 1.02130 1.21959 0.96410 0.98595 0.93557 0.91645 1.22515 0.94526 1.00085 0.97770 1.22297 0.97739 0.99902 0.95008 1.22189 0.90534 0.95631 0.94302 0.95964 1.60694 1.04925 1.50945 1.13729 1.21509 0.89145 0.88952 1.03312 1.19047 0.94780 0.94796 0.87979 1.20538 1.32447 1.09093 0.91821 0.93628 1.25393 0.94700 0.98382 0.97234 1.69977 1.47563 1.29340 1.06137 0.85936 0.78382 0.82061 0.77137 1.20092 1.21070 1.20058 1.22970 0.97062 0.94667 1.10170 1.22802 0.99988 1.02338 0.97408 1.21874 0.94989 0.97121 0.96092 0.90117 1.21702 1.01449 0.99140 0.97258 0.92194 0.92091 0.92017 0.90474 0.91347 0.93799 0.93529 0.84612 0.99867 0.88896 0.93002 0.91128 0.91485 0.90509 0.89680 0.91523 0.93118 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.12 71.98 0.66 -1.80 16 2 C -0.09 -2.11 2.99 -9.72 -0.03 -2.14 16 3 H 0.07 1.75 7.86 -2.39 -0.02 1.73 16 4 C -0.11 -2.93 6.33 31.89 0.20 -2.73 16 5 C -0.11 -3.94 5.95 31.67 0.19 -3.75 16 6 C 0.08 2.89 3.20 45.64 0.15 3.04 16 7 H 0.02 0.79 7.96 -2.39 -0.02 0.77 16 8 N -0.67 -27.45 5.18 -487.85 -2.53 -29.98 16 9 C 0.10 4.77 5.19 86.30 0.45 5.21 16 10 C 0.03 1.74 1.92 -52.93 -0.10 1.64 16 11 C -0.50 -28.01 8.98 25.60 0.23 -27.78 16 12 H 0.05 2.57 7.91 -2.91 -0.02 2.55 16 13 C 0.04 2.44 5.04 84.65 0.43 2.87 16 14 N -0.89 -50.71 11.13 21.45 0.24 -50.47 16 15 Si 0.94 44.32 29.59 68.60 2.03 46.35 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 C -0.21 -9.82 9.88 30.60 0.30 -9.52 16 20 C -0.19 -8.07 9.45 30.60 0.29 -7.78 16 21 C -0.08 -2.21 3.07 -10.07 -0.03 -2.24 16 22 H 0.08 1.91 7.81 -2.39 -0.02 1.89 16 23 C -0.14 -3.71 7.79 71.98 0.56 -3.15 16 24 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.78 8.06 -2.38 -0.02 1.76 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 31 H 0.33 12.72 5.69 -89.69 -0.51 12.21 16 32 H -0.02 -0.78 7.84 -2.39 -0.02 -0.80 16 33 H 0.09 5.05 5.07 -2.39 -0.01 5.04 16 34 H 0.26 14.20 8.32 -92.70 -0.77 13.43 16 35 H 0.07 3.10 8.08 -2.39 -0.02 3.09 16 36 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.08 3.22 8.02 -2.39 -0.02 3.20 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.05 1.32 7.17 -2.39 -0.02 1.31 16 41 H 0.05 1.73 7.38 -2.39 -0.02 1.71 16 Total: -1.00 -58.50 316.46 3.49 -55.01 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.46 Total: 27.22 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 3.29 Total: -48.13 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.29 Total: -80.45 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -58.50 3.49 -55.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252111573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.207 kcal (2) G-P(sol) polarization free energy of solvation -58.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds