Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47420 * 239.99817 * 2 1 3 5 5 C 1.53003 * 109.47088 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47163 * 60.00193 * 5 4 2 7 7 C 1.53000 * 109.46961 * 299.99885 * 6 5 4 8 8 H 1.09007 * 109.46933 * 299.99890 * 7 6 5 9 9 N 1.46900 * 109.47100 * 180.02562 * 7 6 5 10 10 C 1.47841 * 111.00093 * 179.14115 * 9 7 6 11 11 C 1.54913 * 104.89573 * 213.57964 * 10 9 7 12 12 C 1.55429 * 101.51951 * 37.06582 * 11 10 9 13 13 H 1.08996 * 110.69277 * 82.75512 * 12 11 10 14 14 C 1.50696 * 110.69197 * 205.97537 * 12 11 10 15 15 H 1.07996 * 120.00022 * 113.62405 * 14 12 11 16 16 C 1.37870 * 119.99970 * 293.62337 * 14 12 11 17 17 N 1.31518 * 120.00295 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00079 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47437 * 90.00049 * 18 16 14 20 20 H 1.48507 * 109.47122 * 210.00069 * 18 16 14 21 21 H 1.48498 * 109.47016 * 329.99293 * 18 16 14 22 22 C 1.47445 * 111.00199 * 58.29894 * 9 7 6 23 23 C 1.52990 * 109.47286 * 60.00123 * 7 6 5 24 24 H 1.08992 * 109.47412 * 299.99814 * 1 2 3 25 25 H 1.09000 * 109.46610 * 60.00519 * 1 2 3 26 26 H 1.09004 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47005 * 299.99568 * 4 2 1 28 28 H 1.09001 * 109.47137 * 59.99811 * 4 2 1 29 29 H 1.09002 * 109.46694 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.46758 * 299.99613 * 5 4 2 31 31 H 1.09005 * 109.46792 * 180.02562 * 6 5 4 32 32 H 1.08992 * 109.47566 * 59.99927 * 6 5 4 33 33 H 1.09000 * 110.37597 * 332.46714 * 10 9 7 34 34 H 1.08999 * 110.37505 * 94.69111 * 10 9 7 35 35 H 1.09001 * 110.98861 * 155.21526 * 11 10 9 36 36 H 1.08998 * 110.98591 * 279.03406 * 11 10 9 37 37 H 0.96999 * 120.00555 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.89021 * 242.66653 * 22 9 7 39 39 H 1.09005 * 109.88808 * 3.85410 * 22 9 7 40 40 H 1.09007 * 109.47325 * 60.00007 * 23 7 6 41 41 H 1.09002 * 109.47631 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9332 0.3055 1.2498 9 7 4.0591 -1.4146 2.4491 10 6 3.6019 -0.7323 3.6785 11 6 4.7540 -0.9295 4.6952 12 6 6.0023 -0.8103 3.7768 13 1 6.2607 0.2356 3.6120 14 6 7.1687 -1.5630 4.3633 15 1 7.5558 -2.4365 3.8599 16 6 7.7415 -1.1365 5.5426 17 7 8.7591 -1.7936 6.0548 18 14 7.0714 0.3740 6.4138 19 1 6.0090 -0.0350 7.3672 20 1 8.1692 1.0460 7.1545 21 1 6.5036 1.3119 5.4122 22 6 5.5324 -1.4697 2.4630 23 6 2.0396 -0.7216 1.2493 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6768 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9334 -1.2361 -2.1386 30 1 3.9337 0.3058 -1.2486 31 1 5.1696 -1.4433 0.0009 32 1 3.7159 -2.4709 0.0003 33 1 3.4425 0.3288 3.4867 34 1 2.6858 -1.1919 4.0492 35 1 4.7464 -0.1442 5.4510 36 1 4.7020 -1.9151 5.1578 37 1 9.1620 -1.4937 6.8847 38 1 5.8650 -2.5072 2.4292 39 1 5.9321 -0.9219 1.6096 40 1 1.6758 -1.7492 1.2491 41 1 1.6761 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -23.806336 kcal Electronic energy + Delta-G solvation = -17735.435484 eV Core-core repulsion = 15227.752390 eV Total energy + Delta-G solvation = -2507.683094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48593 -37.20462 -33.27808 -32.32868 -31.21497 -28.59615 -28.16646 -26.22405 -24.16964 -22.39763 -21.12168 -20.11805 -19.70729 -19.02826 -16.89796 -15.89418 -14.95698 -14.83218 -14.28795 -14.25852 -13.85966 -13.39378 -13.03392 -12.76019 -12.51175 -12.35612 -12.29076 -12.00405 -11.70995 -11.27428 -11.08533 -11.02610 -10.86774 -10.76732 -10.62975 -10.46917 -10.02923 -9.94852 -9.83395 -9.77738 -9.43676 -9.04078 -8.53756 -7.67415 -6.06430 -4.04980 3.28370 3.36957 3.38394 4.36533 4.42466 4.69676 4.76095 4.97855 5.17185 5.22896 5.27634 5.42891 5.49869 5.50865 5.61854 5.63990 5.69170 5.75124 5.80119 5.88058 5.94276 5.99946 6.02203 6.11078 6.18123 6.19311 6.30647 6.32397 6.37397 6.45372 6.57290 6.64849 6.80485 6.87895 7.09704 7.35000 7.67809 7.76848 7.79697 8.53666 8.97434 9.56355 11.06843 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.043546 B = 0.005888 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.840135 B = 4754.510813 C = 5128.011779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.082 3.918 8 H 0.033 0.967 9 N -0.528 5.528 10 C 0.045 3.955 11 C -0.134 4.134 12 C -0.003 4.003 13 H 0.029 0.971 14 C -0.505 4.505 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.267 1.267 22 C 0.058 3.942 23 C -0.104 4.104 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.541 4.005 -12.043 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.027 4.027 8 H 0.051 0.949 9 N -0.252 5.252 10 C -0.083 4.083 11 C -0.173 4.173 12 C -0.023 4.023 13 H 0.047 0.953 14 C -0.543 4.543 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.069 4.069 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.607 3.486 -11.912 19.168 hybrid contribution 0.069 1.678 0.688 1.815 sum -14.539 5.164 -11.223 19.079 Atomic orbital electron populations 1.21810 0.95432 1.01707 1.01299 1.21134 0.95188 0.99538 0.95252 0.91606 1.21591 0.95686 1.00608 0.97101 1.21526 0.95494 1.00649 0.97925 1.21641 1.00750 0.99829 0.92942 1.21738 0.94646 0.95318 0.90988 0.94860 1.63660 1.10926 1.49816 1.00836 1.22979 0.98663 0.95610 0.91050 1.23147 0.95526 1.01350 0.97238 1.20397 0.93812 0.96399 0.91701 0.95265 1.20957 1.12854 1.13065 1.07428 0.90659 1.24977 0.94544 0.96431 0.97041 1.69900 1.23415 1.40145 1.20559 0.86901 0.78304 0.83994 0.79988 1.20271 1.22001 1.19235 1.22837 0.84958 1.01297 0.97796 1.21624 0.94762 1.01021 0.96793 0.92841 0.93002 0.92704 0.91951 0.92469 0.92045 0.92318 0.91571 0.91273 0.94933 0.91619 0.93231 0.90634 0.92695 0.90642 0.94165 0.91279 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.98 2.72 -90.62 -0.25 -1.23 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 5 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.11 -1.55 5.04 -26.73 -0.13 -1.68 16 7 C 0.08 1.24 1.56 -67.72 -0.11 1.13 16 8 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 9 N -0.53 -9.60 5.03 -223.29 -1.12 -10.73 16 10 C 0.04 0.81 5.42 -2.30 -0.01 0.80 16 11 C -0.13 -2.92 5.46 -24.43 -0.13 -3.05 16 12 C 0.00 -0.08 2.33 -89.79 -0.21 -0.29 16 13 H 0.03 0.72 7.03 -51.93 -0.37 0.36 16 14 C -0.50 -14.24 9.05 -34.44 -0.31 -14.55 16 15 H 0.08 2.29 7.78 -52.49 -0.41 1.88 16 16 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 17 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 18 Si 0.88 21.93 24.80 -169.99 -4.22 17.71 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.43 6.46 56.52 0.36 -6.07 16 22 C 0.06 1.20 5.73 -2.83 -0.02 1.18 16 23 C -0.10 -1.34 4.40 -26.73 -0.12 -1.45 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.96 6.40 -51.93 -0.33 0.63 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.08 5.60 -51.93 -0.29 0.78 16 36 H 0.07 1.72 8.04 -51.93 -0.42 1.30 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 1.65 7.63 -51.93 -0.40 1.26 16 39 H 0.04 0.78 6.23 -51.93 -0.32 0.46 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.78 7.14 -51.93 -0.37 0.41 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -29.25 301.37 -8.91 -38.15 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.54 Total: -1.85 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.34 Total: -20.88 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.35 Total: -37.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.22 Total: 17.71 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.25 -8.91 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.346 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds