Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47420 * 239.99817 * 2 1 3 5 5 C 1.53003 * 109.47088 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47163 * 60.00193 * 5 4 2 7 7 C 1.53000 * 109.46961 * 299.99885 * 6 5 4 8 8 H 1.09007 * 109.46933 * 299.99890 * 7 6 5 9 9 N 1.46900 * 109.47100 * 180.02562 * 7 6 5 10 10 C 1.47841 * 111.00093 * 179.14115 * 9 7 6 11 11 C 1.54913 * 104.89573 * 213.57964 * 10 9 7 12 12 C 1.55429 * 101.51951 * 37.06582 * 11 10 9 13 13 H 1.08996 * 110.69277 * 82.75512 * 12 11 10 14 14 C 1.50696 * 110.69197 * 205.97537 * 12 11 10 15 15 H 1.07996 * 120.00022 * 113.62405 * 14 12 11 16 16 C 1.37870 * 119.99970 * 293.62337 * 14 12 11 17 17 N 1.31518 * 120.00295 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00079 * 0.02562 * 16 14 12 19 19 H 1.48493 * 109.47437 * 90.00049 * 18 16 14 20 20 H 1.48507 * 109.47122 * 210.00069 * 18 16 14 21 21 H 1.48498 * 109.47016 * 329.99293 * 18 16 14 22 22 C 1.47445 * 111.00199 * 58.29894 * 9 7 6 23 23 C 1.52990 * 109.47286 * 60.00123 * 7 6 5 24 24 H 1.08992 * 109.47412 * 299.99814 * 1 2 3 25 25 H 1.09000 * 109.46610 * 60.00519 * 1 2 3 26 26 H 1.09004 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47005 * 299.99568 * 4 2 1 28 28 H 1.09001 * 109.47137 * 59.99811 * 4 2 1 29 29 H 1.09002 * 109.46694 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.46758 * 299.99613 * 5 4 2 31 31 H 1.09005 * 109.46792 * 180.02562 * 6 5 4 32 32 H 1.08992 * 109.47566 * 59.99927 * 6 5 4 33 33 H 1.09000 * 110.37597 * 332.46714 * 10 9 7 34 34 H 1.08999 * 110.37505 * 94.69111 * 10 9 7 35 35 H 1.09001 * 110.98861 * 155.21526 * 11 10 9 36 36 H 1.08998 * 110.98591 * 279.03406 * 11 10 9 37 37 H 0.96999 * 120.00555 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.89021 * 242.66653 * 22 9 7 39 39 H 1.09005 * 109.88808 * 3.85410 * 22 9 7 40 40 H 1.09007 * 109.47325 * 60.00007 * 23 7 6 41 41 H 1.09002 * 109.47631 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9332 0.3055 1.2498 9 7 4.0591 -1.4146 2.4491 10 6 3.6019 -0.7323 3.6785 11 6 4.7540 -0.9295 4.6952 12 6 6.0023 -0.8103 3.7768 13 1 6.2607 0.2356 3.6120 14 6 7.1687 -1.5630 4.3633 15 1 7.5558 -2.4365 3.8599 16 6 7.7415 -1.1365 5.5426 17 7 8.7591 -1.7936 6.0548 18 14 7.0714 0.3740 6.4138 19 1 6.0090 -0.0350 7.3672 20 1 8.1692 1.0460 7.1545 21 1 6.5036 1.3119 5.4122 22 6 5.5324 -1.4697 2.4630 23 6 2.0396 -0.7216 1.2493 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6768 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9334 -1.2361 -2.1386 30 1 3.9337 0.3058 -1.2486 31 1 5.1696 -1.4433 0.0009 32 1 3.7159 -2.4709 0.0003 33 1 3.4425 0.3288 3.4867 34 1 2.6858 -1.1919 4.0492 35 1 4.7464 -0.1442 5.4510 36 1 4.7020 -1.9151 5.1578 37 1 9.1620 -1.4937 6.8847 38 1 5.8650 -2.5072 2.4292 39 1 5.9321 -0.9219 1.6096 40 1 1.6758 -1.7492 1.2491 41 1 1.6761 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397664387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -41.707342 kcal Electronic energy + Delta-G solvation = -17736.211730 eV Core-core repulsion = 15227.752390 eV Total energy + Delta-G solvation = -2508.459340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74969 -38.51208 -35.08044 -33.61820 -32.65822 -30.22661 -29.54789 -27.15846 -26.06811 -23.55131 -22.35660 -21.60724 -20.79008 -20.52681 -19.01238 -17.29312 -16.57522 -15.98696 -15.81111 -15.27991 -15.10009 -14.87674 -14.40370 -14.35091 -13.95541 -13.85820 -13.32963 -13.14224 -12.99002 -12.70705 -12.68318 -12.37460 -12.15574 -12.00407 -11.86589 -11.78009 -11.58296 -11.37969 -11.31640 -11.15175 -11.02727 -10.81797 -10.72510 -9.15578 -8.31306 -6.35020 1.30168 1.32830 1.43095 2.31792 3.02406 3.04865 3.75762 3.81737 3.95935 4.08707 4.14211 4.20691 4.30023 4.37974 4.45128 4.48598 4.59291 4.62331 4.71245 4.73388 4.80857 4.84950 4.92372 5.00561 5.04616 5.11480 5.13484 5.20215 5.26936 5.30678 5.36084 5.36941 5.41359 5.47832 5.49341 5.63847 5.69892 6.11671 6.27030 6.37500 6.70468 7.29960 8.85673 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.043546 B = 0.005888 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.840135 B = 4754.510813 C = 5128.011779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.113 4.113 7 C 0.080 3.920 8 H 0.027 0.973 9 N -0.533 5.533 10 C 0.054 3.946 11 C -0.133 4.133 12 C -0.009 4.009 13 H 0.027 0.973 14 C -0.512 4.512 15 H 0.033 0.967 16 C 0.014 3.986 17 N -0.950 5.950 18 Si 0.943 3.057 19 H -0.262 1.262 20 H -0.292 1.292 21 H -0.250 1.250 22 C 0.069 3.931 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.266 0.734 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 5.784 -12.975 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.029 4.029 8 H 0.045 0.955 9 N -0.257 5.257 10 C -0.074 4.074 11 C -0.172 4.172 12 C -0.029 4.029 13 H 0.045 0.955 14 C -0.550 4.550 15 H 0.051 0.949 16 C -0.183 4.183 17 N -0.591 5.591 18 Si 0.768 3.232 19 H -0.188 1.188 20 H -0.218 1.218 21 H -0.174 1.174 22 C -0.058 4.058 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.329 5.264 -12.865 22.215 hybrid contribution 0.967 1.033 0.920 1.688 sum -16.362 6.297 -11.946 21.214 Atomic orbital electron populations 1.21777 0.94021 1.02072 1.02048 1.21117 0.96308 0.99129 0.94259 0.91665 1.21586 0.94606 1.00910 0.97588 1.21504 0.96440 1.00370 0.96832 1.21624 0.99754 0.99869 0.93789 1.21884 0.96349 0.94637 0.90000 0.95491 1.63664 1.08847 1.50917 1.02282 1.22954 0.97889 0.96782 0.89756 1.23025 0.95793 1.00609 0.97741 1.20356 0.93224 0.95595 0.93685 0.95498 1.21215 1.14289 1.12129 1.07390 0.94856 1.25847 0.94727 0.99802 0.97884 1.70050 1.25232 1.42388 1.21395 0.85867 0.77998 0.80120 0.79184 1.18752 1.21837 1.17365 1.22566 0.86981 0.99704 0.96578 1.21586 0.92649 1.01203 0.98165 0.92737 0.91683 0.92540 0.91833 0.90635 0.90848 0.92241 0.93207 0.91747 0.93450 0.89437 0.92731 0.92325 0.92501 0.92916 0.93294 0.91640 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 2 C -0.09 -1.62 2.72 -10.79 -0.03 -1.65 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.85 5.20 30.60 0.16 -1.69 16 5 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 6 C -0.11 -2.92 5.04 30.59 0.15 -2.77 16 7 C 0.08 2.26 1.56 44.91 0.07 2.33 16 8 H 0.03 0.82 8.07 -2.38 -0.02 0.80 16 9 N -0.53 -18.73 5.03 -860.36 -4.33 -23.06 16 10 C 0.05 1.82 5.42 86.78 0.47 2.30 16 11 C -0.13 -5.63 5.46 32.08 0.18 -5.46 16 12 C -0.01 -0.42 2.33 -10.26 -0.02 -0.45 16 13 H 0.03 1.30 7.03 -2.39 -0.02 1.28 16 14 C -0.51 -29.87 9.05 25.60 0.23 -29.63 16 15 H 0.03 2.15 7.78 -2.91 -0.02 2.13 16 16 C 0.01 0.85 5.46 84.65 0.46 1.31 16 17 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 18 Si 0.94 45.00 24.80 68.60 1.70 46.70 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.25 -11.11 6.46 99.48 0.64 -10.47 16 22 C 0.07 2.89 5.73 86.65 0.50 3.38 16 23 C -0.10 -2.26 4.40 30.59 0.13 -2.13 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.43 6.40 -2.38 -0.02 1.42 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.49 7.64 -2.39 -0.02 1.48 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 2.23 5.60 -2.39 -0.01 2.22 16 36 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.05 2.41 7.63 -2.39 -0.02 2.39 16 39 H 0.05 1.92 6.23 -2.38 -0.01 1.90 16 40 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.06 1.37 7.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.14 301.37 1.71 -62.43 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.90 Total: 11.82 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 3.14 Total: -37.95 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -4.03 Total: -83.00 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.70 Total: 46.70 kcal Total: -64.14 1.71 -62.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.721 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds