Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 N 1.46504 * 109.46895 * 185.37952 * 3 2 1 5 5 C 1.36937 * 119.99662 * 85.19884 * 4 3 2 6 6 H 1.08001 * 119.99675 * 167.18567 * 5 4 3 7 7 C 1.38813 * 120.00229 * 347.18663 * 5 4 3 8 8 N 1.31612 * 119.99989 * 10.33101 * 7 5 4 9 9 Si 1.86797 * 119.99809 * 190.32870 * 7 5 4 10 10 H 1.48504 * 109.47465 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47217 * 120.00346 * 9 7 5 12 12 H 1.48507 * 109.47118 * 239.99806 * 9 7 5 13 13 C 1.46489 * 120.00040 * 265.19594 * 4 3 2 14 14 C 1.52997 * 109.47500 * 275.66191 * 13 4 3 15 15 H 1.09005 * 109.61394 * 54.63958 * 14 13 4 16 16 C 1.53297 * 109.61904 * 294.28239 * 14 13 4 17 17 C 1.52877 * 108.58379 * 165.82236 * 16 14 13 18 18 C 1.52710 * 110.15323 * 54.52248 * 17 16 14 19 19 H 1.08997 * 115.39556 * 127.17721 * 18 17 16 20 20 C 1.53660 * 116.02830 * 269.79835 * 18 17 16 21 21 C 1.52074 * 120.51982 * 338.52474 * 18 17 16 22 22 H 1.09006 * 115.92705 * 149.26486 * 21 18 17 23 23 C 1.52064 * 120.02232 * 5.29539 * 21 18 17 24 24 H 1.09001 * 109.47635 * 60.00172 * 1 2 3 25 25 H 1.09002 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46958 * 299.99883 * 1 2 3 27 27 H 1.09004 * 109.46989 * 239.99562 * 2 1 3 28 28 H 1.09003 * 109.46949 * 120.00453 * 2 1 3 29 29 H 1.08995 * 109.47126 * 305.37815 * 3 2 1 30 30 H 1.08995 * 109.47143 * 65.37784 * 3 2 1 31 31 H 0.97003 * 119.99981 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47255 * 35.66533 * 13 4 3 33 33 H 1.09005 * 109.47526 * 155.66552 * 13 4 3 34 34 H 1.09005 * 109.61996 * 285.55027 * 16 14 13 35 35 H 1.09003 * 109.62087 * 46.09042 * 16 14 13 36 36 H 1.09007 * 109.35844 * 174.72733 * 17 16 14 37 37 H 1.08995 * 109.35698 * 294.44967 * 17 16 14 38 38 H 1.08999 * 117.53483 * 219.06177 * 20 18 17 39 39 H 1.09004 * 117.53632 * 4.30642 * 20 18 17 40 40 H 1.09003 * 109.27053 * 218.03179 * 23 21 18 41 41 H 1.09003 * 109.27111 * 98.56384 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4993 1.4444 -0.1295 5 6 4.0766 1.3830 -1.3697 6 1 5.1300 1.5910 -1.4858 7 6 3.3080 1.0536 -2.4776 8 7 1.9968 0.9995 -2.3764 9 14 4.1345 0.6870 -4.1122 10 1 5.6064 0.8155 -3.9625 11 1 3.7985 -0.6955 -4.5377 12 1 3.6556 1.6501 -5.1361 13 6 4.3408 1.5120 1.0677 14 6 4.5087 2.9726 1.4912 15 1 3.5283 3.4318 1.6182 16 6 5.2978 3.7321 0.4186 17 6 5.1512 5.2318 0.6764 18 6 5.5704 5.5633 2.1069 19 1 6.3154 6.3528 2.2047 20 6 4.4567 5.5141 3.1644 21 6 5.5789 4.4845 3.1788 22 1 6.3228 4.6016 3.9669 23 6 5.2851 3.0397 2.8065 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6002 1.9833 -0.8379 30 1 1.7574 1.9277 0.9342 31 1 1.4597 0.7689 -3.1506 32 1 3.8697 0.9515 1.8751 33 1 5.3185 1.0824 0.8494 34 1 6.3501 3.4528 0.4719 35 1 4.9017 3.4898 -0.5675 36 1 5.7825 5.7818 -0.0216 37 1 4.1113 5.5236 0.5300 38 1 4.4648 6.2792 3.9407 39 1 3.4703 5.1800 2.8424 40 1 4.6939 2.5776 3.5971 41 1 6.2247 2.4981 2.6974 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403211736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = 30.003361 kcal Electronic energy + Delta-G solvation = -17976.362365 eV Core-core repulsion = 15471.012634 eV Total energy + Delta-G solvation = -2505.349731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.29753 -36.26787 -33.37747 -31.55353 -30.83215 -30.09562 -25.87540 -25.43434 -23.60567 -22.11533 -21.09292 -20.40859 -19.34810 -18.01545 -16.62349 -15.72083 -15.07509 -14.10090 -13.76376 -13.72508 -13.38147 -13.14276 -12.87165 -12.60826 -12.08036 -11.90651 -11.79111 -11.26976 -11.04097 -11.01976 -10.80285 -10.75184 -10.33187 -10.24007 -10.12950 -9.98833 -9.80704 -9.64498 -9.40703 -9.39089 -9.25506 -9.19625 -8.21551 -6.67167 -5.51451 -3.01759 3.42037 3.50109 3.50770 3.98894 4.55513 4.91637 5.06767 5.12788 5.34372 5.47334 5.50719 5.66747 5.79678 5.91568 5.93644 5.98994 6.12182 6.16719 6.24635 6.34438 6.35671 6.39261 6.42976 6.49653 6.60857 6.70731 6.74098 6.77470 6.85329 6.91864 7.07664 7.19309 7.24945 7.38672 7.48416 7.76883 8.05915 8.15881 8.61116 9.39843 10.01391 10.45103 11.38419 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.007951 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.113928 B = 3520.669642 C = 4251.329782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.168 3.832 4 N -0.602 5.602 5 C -0.232 4.232 6 H 0.073 0.927 7 C -0.009 4.009 8 N -0.903 5.903 9 Si 0.899 3.101 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.294 1.294 13 C 0.156 3.844 14 C -0.106 4.106 15 H 0.061 0.939 16 C -0.111 4.111 17 C -0.087 4.087 18 C -0.145 4.145 19 H 0.092 0.908 20 C -0.186 4.186 21 C -0.137 4.137 22 H 0.088 0.912 23 C -0.083 4.083 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.111 0.889 30 H -0.008 1.008 31 H 0.246 0.754 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 5.310 8.401 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C 0.044 3.956 4 N -0.323 5.323 5 C -0.361 4.361 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.552 5.552 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.221 1.221 13 C 0.029 3.971 14 C -0.127 4.127 15 H 0.080 0.920 16 C -0.148 4.148 17 C -0.125 4.125 18 C -0.164 4.164 19 H 0.110 0.890 20 C -0.223 4.223 21 C -0.155 4.155 22 H 0.107 0.893 23 C -0.121 4.121 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.025 0.975 29 H 0.128 0.872 30 H 0.010 0.990 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.572 5.269 8.253 10.423 hybrid contribution 0.409 -0.184 -0.701 0.832 sum 3.981 5.085 7.552 9.937 Atomic orbital electron populations 1.21582 0.98600 0.98753 1.00191 1.22082 0.92941 1.00776 0.99545 1.21159 0.82402 0.94572 0.97516 1.44132 1.01630 1.85536 1.00973 1.19329 0.93772 1.38601 0.84413 0.90921 1.24831 0.95670 1.01928 0.98016 1.70129 1.02816 1.54264 1.27952 0.86232 0.78587 0.77722 0.84387 1.20742 1.21908 1.22144 1.20740 0.94752 0.92241 0.89386 1.21867 0.97957 0.99852 0.93033 0.92022 1.21624 0.99110 0.92652 1.01451 1.21055 1.00721 0.97888 0.92825 1.22247 1.00846 1.00973 0.92298 0.89004 1.23098 0.94913 1.02090 1.02211 1.21809 1.00840 0.92524 1.00373 0.89335 1.20891 1.00201 0.93043 0.98000 0.92440 0.95443 0.95350 0.89790 0.97475 0.87194 0.99003 0.94224 0.95132 0.93687 0.93368 0.88914 0.92529 0.92032 0.89779 0.88655 0.92346 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.91 37.16 0.37 -2.33 16 2 C -0.11 -2.65 5.43 -26.73 -0.15 -2.80 16 3 C 0.17 4.06 4.99 -4.04 -0.02 4.04 16 4 N -0.60 -14.50 2.34 -173.25 -0.41 -14.91 16 5 C -0.23 -6.03 8.06 -15.06 -0.12 -6.16 16 6 H 0.07 1.87 7.45 -52.49 -0.39 1.48 16 7 C -0.01 -0.24 5.12 -17.43 -0.09 -0.33 16 8 N -0.90 -24.46 7.62 55.49 0.42 -24.04 16 9 Si 0.90 21.50 29.57 -169.99 -5.03 16.48 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.16 3.19 5.11 -4.05 -0.02 3.17 16 14 C -0.11 -1.88 2.14 -90.53 -0.19 -2.07 16 15 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 16 C -0.11 -1.98 5.19 -26.64 -0.14 -2.12 16 17 C -0.09 -1.36 5.84 -26.94 -0.16 -1.52 16 18 C -0.15 -2.01 6.19 -90.90 -0.56 -2.57 16 19 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.19 -2.46 9.66 -26.74 -0.26 -2.72 16 21 C -0.14 -1.86 6.00 -91.92 -0.55 -2.41 16 22 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.08 -1.24 5.22 -27.27 -0.14 -1.38 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 2.23 6.25 -51.93 -0.32 1.90 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.11 2.96 5.74 -51.93 -0.30 2.67 16 30 H -0.01 -0.19 8.04 -51.93 -0.42 -0.61 16 31 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.04 0.92 7.99 -51.93 -0.42 0.50 16 34 H 0.05 0.83 8.04 -51.93 -0.42 0.42 16 35 H 0.09 1.96 5.68 -51.93 -0.30 1.67 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.37 7.27 -51.93 -0.38 0.99 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -26.08 309.19 -9.89 -35.97 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.51 Total: 1.03 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.03 Total: -19.20 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.02 Total: -38.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.08 -9.89 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403211736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -26.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds