Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 N 1.46504 * 109.46895 * 185.37952 * 3 2 1 5 5 C 1.36937 * 119.99662 * 85.19884 * 4 3 2 6 6 H 1.08001 * 119.99675 * 167.18567 * 5 4 3 7 7 C 1.38813 * 120.00229 * 347.18663 * 5 4 3 8 8 N 1.31612 * 119.99989 * 10.33101 * 7 5 4 9 9 Si 1.86797 * 119.99809 * 190.32870 * 7 5 4 10 10 H 1.48504 * 109.47465 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47217 * 120.00346 * 9 7 5 12 12 H 1.48507 * 109.47118 * 239.99806 * 9 7 5 13 13 C 1.46489 * 120.00040 * 265.19594 * 4 3 2 14 14 C 1.52997 * 109.47500 * 275.66191 * 13 4 3 15 15 H 1.09005 * 109.61394 * 54.63958 * 14 13 4 16 16 C 1.53297 * 109.61904 * 294.28239 * 14 13 4 17 17 C 1.52877 * 108.58379 * 165.82236 * 16 14 13 18 18 C 1.52710 * 110.15323 * 54.52248 * 17 16 14 19 19 H 1.08997 * 115.39556 * 127.17721 * 18 17 16 20 20 C 1.53660 * 116.02830 * 269.79835 * 18 17 16 21 21 C 1.52074 * 120.51982 * 338.52474 * 18 17 16 22 22 H 1.09006 * 115.92705 * 149.26486 * 21 18 17 23 23 C 1.52064 * 120.02232 * 5.29539 * 21 18 17 24 24 H 1.09001 * 109.47635 * 60.00172 * 1 2 3 25 25 H 1.09002 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46958 * 299.99883 * 1 2 3 27 27 H 1.09004 * 109.46989 * 239.99562 * 2 1 3 28 28 H 1.09003 * 109.46949 * 120.00453 * 2 1 3 29 29 H 1.08995 * 109.47126 * 305.37815 * 3 2 1 30 30 H 1.08995 * 109.47143 * 65.37784 * 3 2 1 31 31 H 0.97003 * 119.99981 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47255 * 35.66533 * 13 4 3 33 33 H 1.09005 * 109.47526 * 155.66552 * 13 4 3 34 34 H 1.09005 * 109.61996 * 285.55027 * 16 14 13 35 35 H 1.09003 * 109.62087 * 46.09042 * 16 14 13 36 36 H 1.09007 * 109.35844 * 174.72733 * 17 16 14 37 37 H 1.08995 * 109.35698 * 294.44967 * 17 16 14 38 38 H 1.08999 * 117.53483 * 219.06177 * 20 18 17 39 39 H 1.09004 * 117.53632 * 4.30642 * 20 18 17 40 40 H 1.09003 * 109.27053 * 218.03179 * 23 21 18 41 41 H 1.09003 * 109.27111 * 98.56384 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4993 1.4444 -0.1295 5 6 4.0766 1.3830 -1.3697 6 1 5.1300 1.5910 -1.4858 7 6 3.3080 1.0536 -2.4776 8 7 1.9968 0.9995 -2.3764 9 14 4.1345 0.6870 -4.1122 10 1 5.6064 0.8155 -3.9625 11 1 3.7985 -0.6955 -4.5377 12 1 3.6556 1.6501 -5.1361 13 6 4.3408 1.5120 1.0677 14 6 4.5087 2.9726 1.4912 15 1 3.5283 3.4318 1.6182 16 6 5.2978 3.7321 0.4186 17 6 5.1512 5.2318 0.6764 18 6 5.5704 5.5633 2.1069 19 1 6.3154 6.3528 2.2047 20 6 4.4567 5.5141 3.1644 21 6 5.5789 4.4845 3.1788 22 1 6.3228 4.6016 3.9669 23 6 5.2851 3.0397 2.8065 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6002 1.9833 -0.8379 30 1 1.7574 1.9277 0.9342 31 1 1.4597 0.7689 -3.1506 32 1 3.8697 0.9515 1.8751 33 1 5.3185 1.0824 0.8494 34 1 6.3501 3.4528 0.4719 35 1 4.9017 3.4898 -0.5675 36 1 5.7825 5.7818 -0.0216 37 1 4.1113 5.5236 0.5300 38 1 4.4648 6.2792 3.9407 39 1 3.4703 5.1800 2.8424 40 1 4.6939 2.5776 3.5971 41 1 6.2247 2.4981 2.6974 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403211736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = 19.646480 kcal Electronic energy + Delta-G solvation = -17976.811473 eV Core-core repulsion = 15471.012634 eV Total energy + Delta-G solvation = -2505.798839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54312 -38.04846 -34.91165 -33.44836 -32.33519 -31.62593 -27.47858 -27.31750 -24.95246 -23.78210 -22.48997 -21.83603 -21.06427 -19.34152 -18.52945 -17.03455 -16.83615 -15.68072 -15.48852 -15.17301 -14.88452 -14.77057 -14.40142 -14.16860 -13.67441 -13.37506 -13.06300 -12.88984 -12.87223 -12.64190 -12.50450 -12.25455 -12.04689 -11.94973 -11.79539 -11.67047 -11.40692 -11.28212 -11.21245 -10.96057 -10.56114 -10.40024 -10.20936 -8.61240 -7.54535 -5.04695 1.48457 1.51910 1.58843 2.58416 2.92027 3.43225 3.73568 3.81262 3.95119 4.01445 4.23816 4.29238 4.50561 4.55608 4.59338 4.64920 4.71369 4.79049 4.86237 4.90159 4.93651 4.96002 5.03218 5.09710 5.15225 5.20891 5.26492 5.29999 5.37781 5.42360 5.51544 5.59180 5.61429 5.70062 5.72441 5.77785 6.05442 6.20642 6.59350 7.36187 8.07176 8.46308 9.33226 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.007951 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.113928 B = 3520.669642 C = 4251.329782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.175 3.825 4 N -0.615 5.615 5 C -0.232 4.232 6 H 0.071 0.929 7 C -0.057 4.057 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.299 1.299 13 C 0.154 3.846 14 C -0.095 4.095 15 H 0.043 0.957 16 C -0.107 4.107 17 C -0.085 4.085 18 C -0.150 4.150 19 H 0.113 0.887 20 C -0.183 4.183 21 C -0.137 4.137 22 H 0.114 0.886 23 C -0.079 4.079 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.011 0.989 29 H 0.081 0.919 30 H 0.001 0.999 31 H 0.239 0.761 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 5.955 10.095 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.050 3.950 4 N -0.336 5.336 5 C -0.362 4.362 6 H 0.089 0.911 7 C -0.250 4.250 8 N -0.566 5.566 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.226 1.226 12 H -0.227 1.227 13 C 0.028 3.972 14 C -0.116 4.116 15 H 0.062 0.938 16 C -0.145 4.145 17 C -0.122 4.122 18 C -0.168 4.168 19 H 0.131 0.869 20 C -0.219 4.219 21 C -0.155 4.155 22 H 0.132 0.868 23 C -0.117 4.117 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.593 5.920 9.969 12.470 hybrid contribution 0.105 -0.376 -1.206 1.268 sum 4.698 5.544 8.763 11.383 Atomic orbital electron populations 1.21466 0.96263 0.99994 1.00443 1.21904 0.95029 0.99627 0.97945 1.20954 0.82608 0.94877 0.96576 1.44298 1.02001 1.85761 1.01577 1.19479 0.93673 1.37708 0.85378 0.91127 1.25410 0.96319 1.02797 1.00498 1.70317 1.03375 1.55012 1.27944 0.85378 0.78107 0.76713 0.81332 1.19989 1.22569 1.22681 1.20886 0.94011 0.94124 0.88164 1.21643 0.97629 0.97461 0.94819 0.93831 1.21502 0.99003 0.94568 0.99381 1.20983 1.00207 0.96103 0.94948 1.22254 1.01814 1.01917 0.90842 0.86852 1.23122 0.93902 1.02516 1.02404 1.21864 1.01548 0.91283 1.00766 0.86847 1.20835 1.00099 0.94648 0.96145 0.93870 0.93701 0.93342 0.93194 0.97008 0.90115 0.98060 0.95026 0.94554 0.93851 0.92807 0.92814 0.91532 0.93504 0.87466 0.90391 0.91508 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.91 71.98 0.71 -4.19 16 2 C -0.11 -4.92 5.43 30.59 0.17 -4.75 16 3 C 0.17 8.56 4.99 86.38 0.43 8.99 16 4 N -0.61 -30.07 2.34 -702.03 -1.64 -31.71 16 5 C -0.23 -12.32 8.06 84.03 0.68 -11.64 16 6 H 0.07 3.70 7.45 -2.91 -0.02 3.68 16 7 C -0.06 -3.08 5.12 84.86 0.43 -2.65 16 8 N -0.92 -51.02 7.62 21.65 0.16 -50.85 16 9 Si 0.95 45.08 29.57 68.60 2.03 47.11 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 13 C 0.15 6.25 5.11 86.38 0.44 6.69 16 14 C -0.09 -3.29 2.14 -10.74 -0.02 -3.31 16 15 H 0.04 1.67 7.12 -2.38 -0.02 1.66 16 16 C -0.11 -3.79 5.19 30.65 0.16 -3.63 16 17 C -0.08 -2.56 5.84 30.46 0.18 -2.38 16 18 C -0.15 -3.73 6.19 -10.97 -0.07 -3.79 16 19 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.18 -4.33 9.66 30.59 0.30 -4.04 16 21 C -0.14 -3.25 6.00 -11.64 -0.07 -3.32 16 22 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 23 C -0.08 -2.17 5.22 30.24 0.16 -2.01 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.05 2.69 6.25 -2.39 -0.01 2.67 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 4.48 5.74 -2.39 -0.01 4.47 16 30 H 0.00 0.06 8.04 -2.39 -0.02 0.04 16 31 H 0.24 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.04 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.04 1.75 7.99 -2.38 -0.02 1.73 16 34 H 0.05 1.81 8.04 -2.38 -0.02 1.79 16 35 H 0.05 2.33 5.68 -2.39 -0.01 2.31 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 1.53 8.05 -2.39 -0.02 1.51 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.14 7.27 -2.39 -0.02 2.12 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -56.24 309.19 5.00 -51.23 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.96 Total: 14.27 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.49 Total: -30.05 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.48 Total: -82.56 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -56.24 5.00 -51.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403211736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.880 kcal (2) G-P(sol) polarization free energy of solvation -56.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds