Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.31160 * 119.99869 * 134.99777 * 15 14 13 17 17 Cl 1.73604 * 119.99643 * 179.97438 * 16 15 14 18 18 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 19 19 C 1.36433 * 120.18865 * 359.97438 * 18 12 11 20 20 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 23 23 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 24 24 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 25 25 H 1.08005 * 120.00471 * 315.00068 * 15 14 13 26 26 H 1.07997 * 120.00270 * 0.02562 * 16 15 14 27 27 H 1.08003 * 119.90956 * 180.02562 * 18 12 11 28 28 H 1.08001 * 120.10139 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -0.2487 -9.3416 -1.9337 17 17 -1.1940 -10.6754 -2.5178 18 6 1.1839 -4.7955 -0.2800 19 6 1.8220 -3.6476 0.0897 20 1 -0.4850 0.8401 0.0004 21 1 -0.1294 -1.4092 -1.5968 22 1 -1.2585 -3.4809 -2.2359 23 1 1.0086 -7.2238 -1.2974 24 1 -0.0572 -7.0898 0.1219 25 1 -1.9229 -8.2116 -1.4610 26 1 0.8297 -9.3971 -1.9473 27 1 1.5419 -5.7496 0.0778 28 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019470074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = -15.028111 kcal Electronic energy + Delta-G solvation = -13639.524001 eV Core-core repulsion = 11067.712778 eV Total energy + Delta-G solvation = -2571.811223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.92000 -36.95168 -36.45844 -33.83219 -33.08294 -29.81707 -29.05957 -26.37420 -24.61559 -21.35856 -20.66907 -20.00625 -17.36646 -17.14985 -16.12677 -15.32221 -15.09870 -14.23283 -13.95785 -13.76398 -12.95869 -12.61426 -12.35190 -12.19532 -11.93940 -11.70089 -11.23868 -11.09761 -10.99474 -10.83499 -10.72920 -10.04945 -9.88058 -9.41584 -9.20818 -9.01834 -7.68295 -7.07486 -6.75415 -4.28872 1.70167 2.13954 2.74556 2.91572 3.07542 3.11140 3.18677 3.93337 4.19655 4.58823 4.81589 5.13879 5.42763 5.51998 5.63794 6.01193 6.05533 6.17162 6.20537 6.68090 6.94382 7.07588 7.15101 7.41832 7.51991 7.74781 7.97453 8.16578 8.39577 8.61228 8.86873 8.94810 10.19433 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.096247 B = 0.003847 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.847240 B = 7277.534202 C = 7467.671146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.012 4.012 13 O -0.323 6.323 14 C 0.099 3.901 15 C -0.125 4.125 16 C -0.106 4.106 17 Cl -0.096 7.096 18 C -0.166 4.166 19 C -0.198 4.198 20 H 0.280 0.720 21 H 0.125 0.875 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.094 0.906 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -10.970 -2.131 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.055 4.055 13 O -0.240 6.240 14 C 0.023 3.977 15 C -0.144 4.144 16 C -0.150 4.150 17 Cl -0.068 7.068 18 C -0.185 4.185 19 C -0.218 4.218 20 H 0.091 0.909 21 H 0.143 0.857 22 H 0.116 0.884 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.112 0.888 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.775 -10.935 -2.282 11.198 hybrid contribution 0.434 0.596 0.248 0.778 sum -0.341 -10.339 -2.034 10.543 Atomic orbital electron populations 1.69836 1.07523 1.29182 1.35831 1.25893 0.94731 1.01275 0.92344 0.86302 0.80545 0.80740 0.79126 1.19367 1.20344 1.18649 1.19484 0.98140 0.91222 1.40472 0.90473 1.17613 0.91804 0.92153 0.89760 1.20963 0.98598 0.96267 0.99484 1.19834 1.00812 0.90182 1.02797 1.18567 0.97245 0.84514 1.05167 1.85846 1.55353 1.12163 1.70589 1.21275 0.95705 0.82524 0.98194 1.23021 1.01692 0.93099 0.96633 1.24251 0.97653 0.90133 1.02953 1.98359 1.73366 1.47804 1.87240 1.20406 0.97918 0.97848 1.02338 1.20570 1.03265 0.92496 1.05476 0.90885 0.85721 0.88405 0.92163 0.91239 0.85321 0.83435 0.88775 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.50 11.00 55.55 0.61 -19.89 15 2 C 0.07 1.86 5.13 -17.34 -0.09 1.77 15 3 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 15 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 7 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 15 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 15 9 C 0.09 2.35 5.57 -106.80 -0.59 1.76 15 10 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 15 11 C -0.12 -2.81 9.92 -39.83 -0.40 -3.21 15 12 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 15 13 O -0.32 -6.46 10.11 -18.73 -0.19 -6.65 15 14 C 0.10 1.49 5.15 36.00 0.19 1.68 15 15 C -0.13 -1.57 9.62 -36.07 -0.35 -1.92 15 16 C -0.11 -1.15 10.42 28.97 0.30 -0.85 15 17 Cl -0.10 -1.03 29.10 -51.86 -1.51 -2.54 15 18 C -0.17 -3.68 8.96 -39.83 -0.36 -4.03 15 19 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 15 20 H 0.28 6.54 8.30 -40.82 -0.34 6.21 15 21 H 0.13 3.30 6.21 -52.49 -0.33 2.97 15 22 H 0.10 2.16 8.06 -52.48 -0.42 1.74 15 23 H 0.06 0.85 7.37 -51.93 -0.38 0.46 15 24 H 0.07 1.01 7.65 -51.93 -0.40 0.61 15 25 H 0.13 1.60 8.06 -52.48 -0.42 1.17 15 26 H 0.15 1.34 7.90 -52.49 -0.41 0.92 15 27 H 0.09 1.77 6.27 -52.48 -0.33 1.44 15 28 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -27.29 265.78 -7.40 -34.69 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.67 Total: 3.73 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.62 Total: -26.83 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.61 Total: -19.89 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.19 Total: -6.65 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.51 Total: -2.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.29 -7.40 -34.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.657 kcal (2) G-P(sol) polarization free energy of solvation -27.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds