Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.31160 * 119.99869 * 134.99777 * 15 14 13 17 17 Cl 1.73604 * 119.99643 * 179.97438 * 16 15 14 18 18 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 19 19 C 1.36433 * 120.18865 * 359.97438 * 18 12 11 20 20 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 23 23 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 24 24 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 25 25 H 1.08005 * 120.00471 * 315.00068 * 15 14 13 26 26 H 1.07997 * 120.00270 * 0.02562 * 16 15 14 27 27 H 1.08003 * 119.90956 * 180.02562 * 18 12 11 28 28 H 1.08001 * 120.10139 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -0.2487 -9.3416 -1.9337 17 17 -1.1940 -10.6754 -2.5178 18 6 1.1839 -4.7955 -0.2800 19 6 1.8220 -3.6476 0.0897 20 1 -0.4850 0.8401 0.0004 21 1 -0.1294 -1.4092 -1.5968 22 1 -1.2585 -3.4809 -2.2359 23 1 1.0086 -7.2238 -1.2974 24 1 -0.0572 -7.0898 0.1219 25 1 -1.9229 -8.2116 -1.4610 26 1 0.8297 -9.3971 -1.9473 27 1 1.5419 -5.7496 0.0778 28 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019470074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = -28.798235 kcal Electronic energy + Delta-G solvation = -13640.121118 eV Core-core repulsion = 11067.712778 eV Total energy + Delta-G solvation = -2572.408340 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56454 -38.36105 -37.66225 -35.37061 -34.47401 -31.64857 -30.90225 -27.72077 -26.35487 -23.04131 -22.47605 -21.12225 -19.22794 -18.74857 -17.30632 -17.04400 -16.53894 -15.76885 -15.59259 -15.07183 -14.58995 -14.09532 -13.95519 -13.64893 -13.50737 -13.17908 -12.80919 -12.66994 -12.40251 -12.37099 -11.84293 -11.71958 -11.64239 -11.20554 -10.91317 -10.12935 -9.55662 -8.92920 -8.59624 -6.22836 0.74699 0.94922 1.03100 1.23826 1.40903 1.53115 1.54281 2.23555 2.71835 2.80476 3.70183 3.90503 4.03945 4.27821 4.32611 4.37662 4.45865 4.86426 5.06850 5.10319 5.19500 5.25321 5.29221 5.58895 5.64941 5.88307 6.06290 6.26545 6.56208 6.79642 6.95456 7.09097 8.37297 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.096247 B = 0.003847 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.847240 B = 7277.534202 C = 7467.671146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.153 4.153 11 C -0.132 4.132 12 C -0.001 4.001 13 O -0.335 6.335 14 C 0.093 3.907 15 C -0.143 4.143 16 C -0.085 4.085 17 Cl -0.092 7.092 18 C -0.163 4.163 19 C -0.208 4.208 20 H 0.287 0.713 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -12.180 -2.115 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.053 3.947 10 C -0.173 4.173 11 C -0.151 4.151 12 C -0.045 4.045 13 O -0.251 6.251 14 C 0.018 3.982 15 C -0.163 4.163 16 C -0.129 4.129 17 Cl -0.064 7.064 18 C -0.182 4.182 19 C -0.228 4.228 20 H 0.098 0.902 21 H 0.126 0.874 22 H 0.127 0.873 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.144 0.856 26 H 0.189 0.811 27 H 0.150 0.850 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.061 -12.179 -2.266 12.389 hybrid contribution 0.152 0.721 0.210 0.767 sum 0.091 -11.458 -2.056 11.641 Atomic orbital electron populations 1.69893 1.08977 1.30465 1.36480 1.26749 0.95488 1.04523 0.91366 0.85182 0.79125 0.76039 0.79280 1.18844 1.19435 1.18157 1.19727 0.98387 0.92393 1.42330 0.90529 1.17977 0.92642 0.93422 0.90705 1.20884 0.99468 0.96386 1.00565 1.20014 1.01238 0.90595 1.03264 1.18630 0.96786 0.85198 1.03852 1.85833 1.55625 1.12828 1.70845 1.21562 0.96870 0.80966 0.98846 1.22794 1.01428 0.93078 0.98969 1.24503 0.98673 0.89309 1.00379 1.98372 1.73565 1.47474 1.86984 1.20733 0.97175 0.98846 1.01439 1.20826 1.03795 0.92549 1.05586 0.90217 0.87358 0.87318 0.90597 0.90461 0.85601 0.81148 0.84960 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.80 11.00 21.82 0.24 -43.56 15 2 C 0.03 1.65 5.13 85.24 0.44 2.09 15 3 Si 0.98 38.20 29.60 68.60 2.03 40.23 15 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 7 C -0.50 -26.81 9.04 23.40 0.21 -26.60 15 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 15 9 C 0.05 2.95 5.57 -21.28 -0.12 2.84 15 10 C -0.15 -8.19 8.64 22.49 0.19 -7.99 15 11 C -0.13 -6.40 9.92 22.11 0.22 -6.19 15 12 C 0.00 -0.04 6.71 22.79 0.15 0.11 15 13 O -0.33 -12.78 10.11 -89.92 -0.91 -13.69 15 14 C 0.09 2.54 5.15 71.24 0.37 2.90 15 15 C -0.14 -3.25 9.62 25.49 0.25 -3.00 15 16 C -0.08 -1.58 10.42 67.62 0.70 -0.87 15 17 Cl -0.09 -1.76 29.10 -2.72 -0.08 -1.84 15 18 C -0.16 -6.94 8.96 22.11 0.20 -6.74 15 19 C -0.21 -10.00 9.74 22.48 0.22 -9.78 15 20 H 0.29 13.68 8.30 -92.71 -0.77 12.91 15 21 H 0.11 6.01 6.21 -2.91 -0.02 5.99 15 22 H 0.11 4.86 8.06 -2.91 -0.02 4.84 15 23 H 0.08 1.85 7.37 -2.39 -0.02 1.83 15 24 H 0.08 2.00 7.65 -2.39 -0.02 1.98 15 25 H 0.13 2.91 8.06 -2.91 -0.02 2.89 15 26 H 0.17 2.40 7.90 -2.91 -0.02 2.37 15 27 H 0.13 4.51 6.27 -2.91 -0.02 4.49 15 28 H 0.11 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -58.95 265.78 5.28 -53.68 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.16 Total: 18.41 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 2.83 Total: -53.24 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.24 Total: -43.56 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.91 Total: -13.69 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -58.95 5.28 -53.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.880 kcal (2) G-P(sol) polarization free energy of solvation -58.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds