Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31163 * 1 3 3 Cl 1.73603 * 119.99859 * 2 1 4 4 C 1.50695 * 120.00117 * 180.02562 * 2 1 3 5 5 O 1.42901 * 109.47307 * 114.99479 * 4 2 1 6 6 C 1.35674 * 117.00062 * 180.02562 * 5 4 2 7 7 C 1.39314 * 119.81783 * 0.24781 * 6 5 4 8 8 C 1.36432 * 120.18227 * 180.26300 * 7 6 5 9 9 C 1.40835 * 119.81560 * 359.47198 * 8 7 6 10 10 C 1.41214 * 120.18162 * 180.30293 * 9 8 7 11 11 H 1.08001 * 119.99977 * 24.53823 * 10 9 8 12 12 C 1.39897 * 119.99713 * 204.53932 * 10 9 8 13 13 N 1.30875 * 120.00270 * 17.91647 * 12 10 9 14 14 Si 1.86801 * 119.99742 * 197.92014 * 12 10 9 15 15 H 1.48492 * 109.47277 * 59.99635 * 14 12 10 16 16 H 1.48504 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46900 * 299.99907 * 14 12 10 18 18 C 1.40833 * 119.64086 * 0.27678 * 9 8 7 19 19 C 1.36441 * 119.81171 * 0.02562 * 18 9 8 20 20 H 1.07999 * 120.00039 * 179.97438 * 1 2 3 21 21 H 1.08000 * 119.99995 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46954 * 354.99891 * 4 2 1 23 23 H 1.08996 * 109.47062 * 234.99663 * 4 2 1 24 24 H 1.07997 * 119.90843 * 0.02879 * 7 6 5 25 25 H 1.08000 * 120.09762 * 179.74428 * 8 7 6 26 26 H 0.97001 * 120.00621 * 179.97438 * 13 12 10 27 27 H 1.07993 * 120.09911 * 180.02562 * 18 9 8 28 28 H 1.07992 * 119.91021 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3050 -0.0006 5 8 2.7963 -1.4324 -1.2217 6 6 3.5335 -2.5599 -1.3836 7 6 3.5463 -3.5288 -0.3826 8 6 4.2892 -4.6629 -0.5352 9 6 5.0356 -4.8577 -1.7135 10 6 5.8022 -6.0316 -1.8823 11 1 5.5371 -6.9313 -1.3468 12 6 6.9049 -6.0291 -2.7432 13 7 7.4416 -4.8952 -3.1160 14 14 7.6113 -7.6444 -3.3607 15 1 6.5684 -8.3843 -4.1157 16 1 8.7675 -7.3706 -4.2515 17 1 8.0600 -8.4624 -2.2053 18 6 5.0131 -3.8757 -2.7227 19 6 4.2699 -2.7443 -2.5518 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.3602 -2.1316 0.0886 23 1 2.7573 -1.3253 0.8412 24 1 2.9695 -3.3800 0.5182 25 1 4.3013 -5.4112 0.2434 26 1 8.2064 -4.8934 -3.7126 27 1 5.5824 -4.0177 -3.6294 28 1 4.2517 -1.9901 -3.3245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019519532.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -25.970216 kcal Electronic energy + Delta-G solvation = -13858.386819 eV Core-core repulsion = 11286.101111 eV Total energy + Delta-G solvation = -2572.285708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.57398 -38.43138 -37.52789 -35.30802 -34.31861 -31.65888 -30.90318 -27.97222 -26.43110 -23.06022 -22.48953 -20.97738 -19.23216 -18.73987 -17.35675 -17.02730 -16.53494 -15.75518 -15.42259 -15.02828 -14.67669 -14.09310 -13.96124 -13.62788 -13.30635 -13.05909 -12.81083 -12.73694 -12.47505 -12.34282 -11.79726 -11.72099 -11.59980 -11.20956 -10.88650 -10.21357 -9.55592 -8.92934 -8.59166 -6.22618 0.78173 0.95791 1.03340 1.28517 1.40354 1.51198 1.55413 2.23294 2.69777 2.75668 3.69774 3.71411 4.18481 4.24968 4.34114 4.39592 4.68077 4.86559 5.06540 5.14115 5.19348 5.23344 5.28507 5.58098 5.64687 5.88536 6.06105 6.26703 6.56054 6.79161 6.95484 7.09110 8.37220 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.065452 B = 0.004696 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.691224 B = 5961.590276 C = 6192.133828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 Cl -0.095 7.095 4 C 0.096 3.904 5 O -0.330 6.330 6 C 0.000 4.000 7 C -0.164 4.164 8 C -0.208 4.208 9 C 0.056 3.944 10 C -0.500 4.500 11 H 0.077 0.923 12 C 0.033 3.967 13 N -0.831 5.831 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.270 1.270 17 H -0.259 1.259 18 C -0.153 4.153 19 C -0.132 4.132 20 H 0.147 0.853 21 H 0.136 0.864 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.287 0.713 27 H 0.110 0.890 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 5.678 4.563 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 Cl -0.068 7.068 4 C 0.021 3.979 5 O -0.246 6.246 6 C -0.044 4.044 7 C -0.183 4.183 8 C -0.227 4.227 9 C 0.054 3.946 10 C -0.530 4.530 11 H 0.095 0.905 12 C -0.181 4.181 13 N -0.458 5.458 14 Si 0.803 3.197 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.184 1.184 18 C -0.173 4.173 19 C -0.151 4.151 20 H 0.165 0.835 21 H 0.154 0.846 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.772 6.067 4.311 12.284 hybrid contribution 0.717 -0.477 -0.135 0.872 sum -9.055 5.590 4.176 11.431 Atomic orbital electron populations 1.24466 0.92391 1.05907 0.93655 1.23069 0.94251 0.86359 1.08722 1.98363 1.78843 1.32462 1.97085 1.21778 0.95126 0.94129 0.86902 1.85900 1.60762 1.38884 1.39090 1.18638 1.00402 0.88194 0.97158 1.20712 1.03427 0.95322 0.98798 1.20816 1.05009 0.99084 0.97837 1.17950 0.92123 0.93626 0.90931 1.19709 1.10821 0.97772 1.24653 0.90459 1.26750 0.95969 1.01305 0.94069 1.69884 1.19084 1.29478 1.27367 0.85253 0.77957 0.77545 0.78939 1.18494 1.19409 1.18365 1.20898 1.01267 0.95251 0.99837 1.20003 0.99784 0.98732 0.96589 0.83493 0.84626 0.88941 0.91521 0.85150 0.87499 0.90200 0.87252 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 14.05 67.62 0.95 -1.19 15 2 C -0.10 -2.38 6.13 25.48 0.16 -2.23 15 3 Cl -0.10 -2.53 28.99 -2.72 -0.08 -2.61 15 4 C 0.10 2.80 5.04 71.23 0.36 3.15 15 5 O -0.33 -13.01 10.11 -89.91 -0.91 -13.92 15 6 C 0.00 -0.01 6.71 22.79 0.15 0.14 15 7 C -0.16 -7.10 8.96 22.11 0.20 -6.90 15 8 C -0.21 -10.11 9.74 22.48 0.22 -9.89 15 9 C 0.06 3.04 5.57 -21.28 -0.12 2.92 15 10 C -0.50 -27.06 9.04 23.40 0.21 -26.85 15 11 H 0.08 3.99 7.91 -2.91 -0.02 3.97 15 12 C 0.03 1.68 5.13 85.24 0.44 2.12 15 13 N -0.83 -44.18 10.96 21.82 0.24 -43.94 15 14 Si 0.98 38.41 29.60 68.60 2.03 40.44 15 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 16 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 18 C -0.15 -8.25 8.64 22.49 0.19 -8.05 15 19 C -0.13 -6.52 9.92 22.11 0.22 -6.30 15 20 H 0.15 1.85 7.84 -2.91 -0.02 1.83 15 21 H 0.14 1.77 8.06 -2.91 -0.02 1.75 15 22 H 0.09 2.30 7.29 -2.38 -0.02 2.28 15 23 H 0.07 1.94 7.66 -2.39 -0.02 1.92 15 24 H 0.13 4.58 6.27 -2.91 -0.02 4.56 15 25 H 0.11 4.81 8.06 -2.91 -0.02 4.79 15 26 H 0.29 13.86 8.30 -92.71 -0.77 13.09 15 27 H 0.11 6.13 6.16 -2.91 -0.02 6.11 15 28 H 0.11 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -60.99 265.51 5.43 -55.56 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.16 Total: 17.55 kcal Atomic # 6 Polarization: -56.05 SS G_CDS: 2.98 Total: -53.07 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.24 Total: -43.94 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.91 Total: -13.92 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.08 Total: -2.61 kcal Total: -60.99 5.43 -55.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019519532.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.590 kcal (2) G-P(sol) polarization free energy of solvation -60.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds