Wall clock time and date at job start Mon Mar 30 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37874 * 120.00313 * 300.00174 * 4 2 1 7 7 N 1.31519 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 60.00406 * 8 6 4 10 10 H 1.48498 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47003 * 300.00307 * 8 6 4 12 12 C 1.50700 * 109.47570 * 239.99535 * 2 1 3 13 13 O 1.21263 * 119.99790 * 269.99837 * 12 2 1 14 14 C 1.47071 * 119.99767 * 90.27404 * 12 2 1 15 15 C 1.39916 * 120.18334 * 359.45196 * 14 12 2 16 16 C 1.37823 * 119.83100 * 179.69760 * 15 14 12 17 17 C 1.38467 * 120.21667 * 0.59847 * 16 15 14 18 18 C 1.38308 * 120.37501 * 359.67782 * 17 16 15 19 19 C 1.38098 * 120.15440 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.10526 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 22 22 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 23 23 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 24 24 H 0.96998 * 119.99976 * 179.97438 * 7 6 4 25 25 H 1.07997 * 120.08403 * 359.97438 * 15 14 12 26 26 H 1.07998 * 119.88650 * 180.30089 * 16 15 14 27 27 H 1.08004 * 119.81630 * 179.69713 * 17 16 15 28 28 H 1.08001 * 119.91871 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.8063 -1.1205 4.0084 10 1 1.8258 -0.4201 5.2205 11 1 1.8258 -2.5198 4.0080 12 6 2.0325 -0.7105 -1.2304 13 8 2.2346 -1.9058 -1.2002 14 6 2.2833 0.0469 -2.4659 15 6 2.0460 1.4251 -2.5066 16 6 2.2895 2.1288 -3.6664 17 6 2.7562 1.4741 -4.7937 18 6 2.9884 0.1110 -4.7650 19 6 2.7554 -0.6082 -3.6093 20 17 3.0479 -2.3190 -3.5744 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7080 1.1611 3.4843 25 1 1.6771 1.9371 -1.6301 26 1 2.1112 3.1935 -3.6973 27 1 2.9402 2.0311 -5.7006 28 1 3.3520 -0.3923 -5.6487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426641.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:29 Heat of formation + Delta-G solvation = -19.087204 kcal Electronic energy + Delta-G solvation = -14415.411087 eV Core-core repulsion = 11843.423848 eV Total energy + Delta-G solvation = -2571.987238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.52451 -37.58680 -36.08240 -33.80386 -31.51303 -30.50320 -30.00425 -25.19025 -24.31848 -22.64055 -21.56404 -18.90562 -17.03055 -16.19848 -15.56185 -15.24699 -14.56126 -14.20868 -13.92178 -13.70138 -13.29942 -12.62759 -12.41444 -11.73613 -11.51409 -11.33973 -11.24782 -11.01978 -10.79882 -10.70389 -10.49366 -10.24166 -10.03610 -9.00842 -8.84209 -8.56188 -8.46960 -8.18782 -6.04783 -4.09345 0.94807 1.34233 2.43264 3.12797 3.34550 3.37332 3.42954 4.04112 4.41550 4.76273 4.88485 5.05906 5.27739 5.28527 5.47390 5.71254 5.92776 6.15413 6.33429 6.47356 6.58569 6.72657 6.87441 6.89003 6.99673 7.49007 7.75629 7.99454 8.23972 8.64711 8.94823 9.55273 11.02077 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.007626 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.272603 B = 3670.769490 C = 4252.241340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.009 3.991 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.388 3.612 13 O -0.439 6.439 14 C -0.146 4.146 15 C -0.059 4.059 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.132 4.132 19 C 0.002 3.998 20 Cl -0.045 7.045 21 H 0.094 0.906 22 H 0.013 0.987 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.148 0.852 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 3.140 -13.078 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.010 4.010 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.264 3.736 13 O -0.313 6.313 14 C -0.148 4.148 15 C -0.077 4.077 16 C -0.152 4.152 17 C -0.112 4.112 18 C -0.151 4.151 19 C -0.025 4.025 20 Cl -0.015 7.015 21 H 0.113 0.887 22 H 0.032 0.968 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.044 2.445 -12.908 13.296 hybrid contribution 0.342 -0.409 0.734 0.907 sum 2.386 2.036 -12.174 12.572 Atomic orbital electron populations 1.21678 0.95950 1.00095 1.00966 1.19122 0.94406 0.97110 0.90340 0.93185 1.21022 1.31396 1.12519 0.89363 0.91609 1.24918 0.94990 0.94990 0.99018 1.69849 1.36774 1.22963 1.23690 0.86547 0.79247 0.79857 0.81765 1.20195 1.21284 1.20139 1.23329 0.73424 0.88776 0.88052 1.90451 1.38886 1.16954 1.84968 1.21110 1.02298 0.95351 0.96054 1.21721 0.94862 0.92400 0.98707 1.21235 1.00507 1.00429 0.93039 1.21232 0.97744 0.93616 0.98596 1.20991 1.02762 0.94439 0.96928 1.21337 0.99906 0.86396 0.94843 1.98391 1.93812 1.10761 1.98556 0.88719 0.96821 0.94821 0.92831 0.83450 0.85157 0.85278 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.95 37.16 0.33 -2.71 15 2 C 0.01 0.22 2.07 -92.92 -0.19 0.03 15 3 H 0.05 1.23 6.48 -51.93 -0.34 0.89 15 4 C -0.50 -14.13 8.32 -34.44 -0.29 -14.42 15 5 H 0.07 1.92 7.14 -52.49 -0.37 1.54 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 15 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 12 C 0.39 8.88 6.16 -30.73 -0.19 8.69 15 13 O -0.44 -10.97 13.58 5.57 0.08 -10.89 15 14 C -0.15 -2.75 5.87 -105.04 -0.62 -3.37 15 15 C -0.06 -0.93 9.36 -39.11 -0.37 -1.30 15 16 C -0.13 -1.67 10.03 -39.65 -0.40 -2.06 15 17 C -0.09 -1.07 10.04 -39.47 -0.40 -1.47 15 18 C -0.13 -1.76 9.82 -39.61 -0.39 -2.15 15 19 C 0.00 0.04 6.36 -38.98 -0.25 -0.21 15 20 Cl -0.04 -0.79 26.03 -51.86 -1.35 -2.14 15 21 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.15 2.33 6.37 -52.49 -0.33 1.99 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.13 1.04 8.06 -52.48 -0.42 0.62 15 28 H 0.13 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 258.88 15.07 3.90 3.90 Total: -1.00 -29.90 258.88 -7.22 -37.12 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.61 Total: -3.07 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.84 Total: -17.36 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.63 Total: -24.16 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.35 Total: -2.14 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.90 -7.22 -37.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426641.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.034 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds