Wall clock time and date at job start Mon Mar 30 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37874 * 120.00313 * 300.00174 * 4 2 1 7 7 N 1.31519 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47147 * 60.00406 * 8 6 4 10 10 H 1.48498 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47003 * 300.00307 * 8 6 4 12 12 C 1.50700 * 109.47570 * 239.99535 * 2 1 3 13 13 O 1.21263 * 119.99790 * 269.99837 * 12 2 1 14 14 C 1.47071 * 119.99767 * 90.27404 * 12 2 1 15 15 C 1.39916 * 120.18334 * 359.45196 * 14 12 2 16 16 C 1.37823 * 119.83100 * 179.69760 * 15 14 12 17 17 C 1.38467 * 120.21667 * 0.59847 * 16 15 14 18 18 C 1.38308 * 120.37501 * 359.67782 * 17 16 15 19 19 C 1.38098 * 120.15440 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.10526 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 22 22 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 23 23 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 24 24 H 0.96998 * 119.99976 * 179.97438 * 7 6 4 25 25 H 1.07997 * 120.08403 * 359.97438 * 15 14 12 26 26 H 1.07998 * 119.88650 * 180.30089 * 16 15 14 27 27 H 1.08004 * 119.81630 * 179.69713 * 17 16 15 28 28 H 1.08001 * 119.91871 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.8063 -1.1205 4.0084 10 1 1.8258 -0.4201 5.2205 11 1 1.8258 -2.5198 4.0080 12 6 2.0325 -0.7105 -1.2304 13 8 2.2346 -1.9058 -1.2002 14 6 2.2833 0.0469 -2.4659 15 6 2.0460 1.4251 -2.5066 16 6 2.2895 2.1288 -3.6664 17 6 2.7562 1.4741 -4.7937 18 6 2.9884 0.1110 -4.7650 19 6 2.7554 -0.6082 -3.6093 20 17 3.0479 -2.3190 -3.5744 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7080 1.1611 3.4843 25 1 1.6771 1.9371 -1.6301 26 1 2.1112 3.1935 -3.6973 27 1 2.9402 2.0311 -5.7006 28 1 3.3520 -0.3923 -5.6487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426641.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:28 Heat of formation + Delta-G solvation = -35.747756 kcal Electronic energy + Delta-G solvation = -14416.133542 eV Core-core repulsion = 11843.423848 eV Total energy + Delta-G solvation = -2572.709694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.93992 -39.07491 -37.35660 -35.81400 -33.11471 -31.68180 -31.60686 -27.27752 -25.84941 -23.92050 -22.99579 -20.50493 -18.55781 -18.03289 -17.09506 -16.63524 -16.24797 -15.65177 -15.36179 -15.03444 -14.92569 -14.20212 -14.10322 -13.44644 -13.05860 -12.81240 -12.75484 -12.61331 -12.45952 -12.33715 -12.21488 -12.07213 -11.88360 -11.05776 -10.54669 -10.00548 -9.94551 -9.73226 -8.15848 -6.27458 -0.31528 0.24258 1.19258 1.39572 1.41099 1.49090 1.66432 2.40863 2.76922 3.12456 3.32527 3.79693 4.09474 4.29219 4.36512 4.49810 4.68296 4.74160 4.95276 4.99048 5.03888 5.22794 5.29996 5.41168 5.50596 5.69134 5.83513 5.93675 6.22195 6.75543 6.91207 7.39539 8.89215 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.007626 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.272603 B = 3670.769490 C = 4252.241340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.004 3.996 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.387 3.613 13 O -0.476 6.476 14 C -0.182 4.182 15 C -0.068 4.068 16 C -0.122 4.122 17 C -0.068 4.068 18 C -0.128 4.128 19 C -0.014 4.014 20 Cl -0.065 7.065 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.017 0.983 24 H 0.266 0.734 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.180 0.820 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 5.039 -15.055 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.015 4.015 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.266 3.734 13 O -0.352 6.352 14 C -0.184 4.184 15 C -0.086 4.086 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.146 4.146 19 C -0.042 4.042 20 Cl -0.035 7.035 21 H 0.094 0.906 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.187 0.813 27 H 0.197 0.803 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.418 4.367 -14.888 15.703 hybrid contribution 0.228 -0.886 1.245 1.545 sum 2.646 3.481 -13.643 14.327 Atomic orbital electron populations 1.21496 0.95384 0.99127 1.01463 1.19098 0.94962 0.96786 0.90679 0.93405 1.21207 1.32000 1.12427 0.91451 0.93981 1.25555 0.95096 0.95677 1.01275 1.69923 1.36861 1.23437 1.24424 0.85706 0.78817 0.78661 0.79049 1.19887 1.19788 1.20508 1.23331 0.72390 0.88456 0.89237 1.90420 1.40796 1.18237 1.85771 1.20734 1.06314 0.96445 0.94907 1.21778 0.95367 0.91253 1.00198 1.21674 0.98538 1.02131 0.91652 1.21837 0.94207 0.92758 0.99820 1.21400 1.01635 0.95351 0.96258 1.21569 1.01073 0.85728 0.95781 1.98378 1.93985 1.12555 1.98622 0.90611 0.93731 0.96384 0.92483 0.84249 0.81292 0.80265 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.95 71.98 0.64 -4.99 15 2 C 0.00 0.18 2.07 -12.29 -0.03 0.16 15 3 H 0.05 2.43 6.48 -2.39 -0.02 2.41 15 4 C -0.53 -30.97 8.32 25.60 0.21 -30.75 15 5 H 0.04 2.58 7.14 -2.91 -0.02 2.56 15 6 C 0.02 1.32 5.30 84.65 0.45 1.77 15 7 N -0.91 -50.85 11.32 21.45 0.24 -50.61 15 8 Si 0.95 44.92 29.54 68.60 2.03 46.95 15 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 12 C 0.39 18.34 6.16 28.01 0.17 18.52 15 13 O -0.48 -24.97 13.58 -2.98 -0.04 -25.01 15 14 C -0.18 -6.83 5.87 -20.13 -0.12 -6.95 15 15 C -0.07 -2.03 9.36 22.58 0.21 -1.82 15 16 C -0.12 -2.48 10.03 22.23 0.22 -2.26 15 17 C -0.07 -1.18 10.04 22.34 0.22 -0.96 15 18 C -0.13 -2.93 9.82 22.25 0.22 -2.71 15 19 C -0.01 -0.48 6.36 22.66 0.14 -0.33 15 20 Cl -0.06 -2.32 26.03 -2.72 -0.07 -2.39 15 21 H 0.08 3.93 6.07 -2.39 -0.01 3.92 15 22 H 0.04 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 24 H 0.27 14.11 8.31 -92.71 -0.77 13.33 15 25 H 0.14 4.31 6.37 -2.91 -0.02 4.30 15 26 H 0.17 2.16 8.06 -2.91 -0.02 2.14 15 27 H 0.18 1.44 8.06 -2.91 -0.02 1.42 15 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -67.68 258.88 5.69 -62.00 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 1.17 Total: -0.60 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 2.36 Total: -30.34 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.24 Total: -50.61 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -67.68 5.69 -62.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426641.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.249 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds