Wall clock time and date at job start Mon Mar 30 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 13 13 O 1.21255 * 120.00122 * 269.99640 * 12 2 1 14 14 C 1.47169 * 120.00143 * 90.00126 * 12 2 1 15 15 C 1.39870 * 120.16937 * 179.97438 * 14 12 2 16 16 C 1.37867 * 119.85131 * 179.97438 * 15 14 12 17 17 C 1.38401 * 120.19346 * 359.97438 * 16 15 14 18 18 C 1.38496 * 120.33122 * 0.02562 * 17 16 15 19 19 Cl 1.73606 * 119.92556 * 180.02562 * 18 17 16 20 20 C 1.38035 * 120.14452 * 359.74044 * 18 17 16 21 21 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 22 22 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.07224 * 359.97438 * 15 14 12 26 26 H 1.08000 * 119.90124 * 180.02562 * 16 15 14 27 27 H 1.07990 * 119.83596 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.09173 * 180.27684 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2304 13 8 2.2345 -1.9056 -1.2004 14 6 2.2777 0.0465 -2.4685 15 6 2.7444 -0.6092 -3.6125 16 6 2.9715 0.1061 -4.7689 17 6 2.7385 1.4700 -4.8008 18 6 2.2763 2.1271 -3.6727 19 17 1.9869 3.8381 -3.7246 20 6 2.0397 1.4237 -2.5088 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7129 1.1642 3.4844 25 1 2.9265 -1.6736 -3.5898 26 1 3.3315 -0.3994 -5.6528 27 1 2.9179 2.0246 -5.7099 28 1 1.6750 1.9362 -1.6309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:33 Heat of formation + Delta-G solvation = -29.337554 kcal Electronic energy + Delta-G solvation = -14218.754287 eV Core-core repulsion = 11646.322560 eV Total energy + Delta-G solvation = -2572.431727 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60525 -37.78848 -36.28040 -33.87748 -31.58451 -30.55429 -30.04217 -25.22213 -24.46721 -22.67351 -21.58875 -18.98454 -17.10002 -16.23018 -15.49214 -15.39636 -14.63419 -14.37558 -13.92859 -13.69966 -13.38134 -12.98619 -12.46625 -11.81684 -11.61194 -11.34838 -11.30989 -11.06314 -10.91253 -10.78293 -10.69171 -10.28184 -10.10365 -9.03873 -8.89926 -8.66365 -8.60431 -8.35401 -6.07311 -4.12536 0.89211 1.29378 2.17212 2.99541 3.30298 3.36597 3.42920 3.99703 4.39030 4.71214 4.84088 5.07011 5.25473 5.29273 5.43449 5.66137 5.84060 6.18402 6.25766 6.35436 6.59091 6.71034 6.80858 6.85298 6.95458 7.44730 7.72556 7.95994 8.18861 8.53599 8.91562 9.52358 10.99570 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.006787 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.799489 B = 4124.779777 C = 4731.214224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.005 3.995 3 H 0.052 0.948 4 C -0.508 4.508 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.399 3.601 13 O -0.458 6.458 14 C -0.140 4.140 15 C -0.070 4.070 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.049 4.049 19 Cl -0.073 7.073 20 C -0.060 4.060 21 H 0.095 0.905 22 H 0.014 0.986 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 3.684 -13.127 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.070 0.930 4 C -0.546 4.546 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.276 3.724 13 O -0.333 6.333 14 C -0.142 4.142 15 C -0.088 4.088 16 C -0.143 4.143 17 C -0.114 4.114 18 C -0.076 4.076 19 Cl -0.045 7.045 20 C -0.079 4.079 21 H 0.114 0.886 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.853 3.318 -12.967 13.513 hybrid contribution 0.282 -0.092 0.756 0.812 sum 2.135 3.226 -12.211 12.810 Atomic orbital electron populations 1.21680 0.95772 1.00114 1.01143 1.19167 0.94546 0.97265 0.90374 0.92988 1.21041 1.31566 1.12607 0.89349 0.91571 1.24931 0.94941 0.94977 0.99070 1.69863 1.36822 1.22675 1.23676 0.86482 0.78541 0.80246 0.82167 1.20595 1.21143 1.19735 1.23406 0.72320 0.88452 0.88214 1.90368 1.40154 1.17384 1.85360 1.21155 1.01703 0.94162 0.97145 1.21594 0.94646 1.00898 0.91674 1.21038 1.01446 0.93355 0.98483 1.21179 0.98341 0.94756 0.97135 1.20862 1.05404 0.85195 0.96115 1.98363 1.94837 1.12545 1.98707 1.21631 0.95664 0.93376 0.97213 0.88643 0.96705 0.94776 0.92809 0.84593 0.84951 0.85036 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.95 37.16 0.33 -2.70 15 2 C 0.01 0.13 2.07 -92.92 -0.19 -0.06 15 3 H 0.05 1.29 6.48 -51.93 -0.34 0.95 15 4 C -0.51 -14.10 8.32 -34.44 -0.29 -14.38 15 5 H 0.07 1.91 7.14 -52.49 -0.37 1.53 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.71 11.33 55.43 0.63 -24.08 15 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 12 C 0.40 8.89 6.17 -30.69 -0.19 8.70 15 13 O -0.46 -11.20 15.95 5.58 0.09 -11.11 15 14 C -0.14 -2.54 5.87 -105.07 -0.62 -3.16 15 15 C -0.07 -1.07 9.60 -39.11 -0.38 -1.44 15 16 C -0.13 -1.52 10.03 -39.66 -0.40 -1.92 15 17 C -0.10 -1.16 9.82 -39.43 -0.39 -1.54 15 18 C -0.05 -0.70 6.31 -39.56 -0.25 -0.95 15 19 Cl -0.07 -0.96 28.95 -51.86 -1.50 -2.46 15 20 C -0.06 -1.00 9.14 -39.07 -0.36 -1.35 15 21 H 0.10 2.42 6.08 -51.93 -0.32 2.11 15 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.14 2.01 7.65 -52.49 -0.40 1.61 15 26 H 0.13 1.18 8.06 -52.49 -0.42 0.75 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.15 2.59 6.37 -52.49 -0.33 2.25 15 LS Contribution 263.08 15.07 3.96 3.96 Total: -1.00 -29.02 263.08 -7.24 -36.26 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -2.59 Total: -1.78 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.81 Total: -17.20 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.02 -7.24 -36.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.926 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds