Wall clock time and date at job start Mon Mar 30 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 13 13 O 1.21255 * 120.00122 * 269.99640 * 12 2 1 14 14 C 1.47169 * 120.00143 * 90.00126 * 12 2 1 15 15 C 1.39870 * 120.16937 * 179.97438 * 14 12 2 16 16 C 1.37867 * 119.85131 * 179.97438 * 15 14 12 17 17 C 1.38401 * 120.19346 * 359.97438 * 16 15 14 18 18 C 1.38496 * 120.33122 * 0.02562 * 17 16 15 19 19 Cl 1.73606 * 119.92556 * 180.02562 * 18 17 16 20 20 C 1.38035 * 120.14452 * 359.74044 * 18 17 16 21 21 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 22 22 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 25 25 H 1.08000 * 120.07224 * 359.97438 * 15 14 12 26 26 H 1.08000 * 119.90124 * 180.02562 * 16 15 14 27 27 H 1.07990 * 119.83596 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.09173 * 180.27684 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2304 13 8 2.2345 -1.9056 -1.2004 14 6 2.2777 0.0465 -2.4685 15 6 2.7444 -0.6092 -3.6125 16 6 2.9715 0.1061 -4.7689 17 6 2.7385 1.4700 -4.8008 18 6 2.2763 2.1271 -3.6727 19 17 1.9869 3.8381 -3.7246 20 6 2.0397 1.4237 -2.5088 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7129 1.1642 3.4844 25 1 2.9265 -1.6736 -3.5898 26 1 3.3315 -0.3994 -5.6528 27 1 2.9179 2.0246 -5.7099 28 1 1.6750 1.9362 -1.6309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:33 Heat of formation + Delta-G solvation = -44.890025 kcal Electronic energy + Delta-G solvation = -14219.428693 eV Core-core repulsion = 11646.322560 eV Total energy + Delta-G solvation = -2573.106133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.03441 -39.25254 -37.37432 -35.87922 -33.18670 -31.76276 -31.64432 -27.30210 -26.00467 -23.95015 -23.06208 -20.57135 -18.65319 -18.06027 -17.09814 -16.67842 -16.22378 -15.84455 -15.51793 -15.10313 -14.90705 -14.31567 -14.24056 -13.52160 -13.05204 -12.90926 -12.74126 -12.67774 -12.46770 -12.43490 -12.24104 -12.10252 -11.97123 -11.08214 -10.58844 -10.23007 -10.07484 -9.79674 -8.17348 -6.30016 -0.37465 0.16249 1.08487 1.39347 1.40201 1.49635 1.54443 2.40058 2.70334 3.10917 3.25547 3.79372 3.98809 4.13230 4.28663 4.52766 4.57480 4.67931 4.87262 4.94646 5.00199 5.09985 5.21214 5.34391 5.48822 5.66328 5.70091 5.90989 6.18101 6.71845 6.81222 7.37576 8.88064 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.006787 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.799489 B = 4124.779777 C = 4731.214224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 H 0.045 0.955 4 C -0.535 4.535 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.401 3.599 13 O -0.493 6.493 14 C -0.168 4.168 15 C -0.073 4.073 16 C -0.107 4.107 17 C -0.075 4.075 18 C -0.055 4.055 19 Cl -0.063 7.063 20 C -0.070 4.070 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.022 0.978 24 H 0.266 0.734 25 H 0.136 0.864 26 H 0.178 0.822 27 H 0.171 0.829 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 4.323 -15.216 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.021 4.021 3 H 0.063 0.937 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.281 3.719 13 O -0.371 6.371 14 C -0.170 4.170 15 C -0.091 4.091 16 C -0.125 4.125 17 C -0.093 4.093 18 C -0.081 4.081 19 Cl -0.034 7.034 20 C -0.089 4.089 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.154 0.846 26 H 0.195 0.805 27 H 0.188 0.812 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.499 3.982 -15.061 15.777 hybrid contribution 0.088 -0.206 1.308 1.327 sum 2.586 3.776 -13.753 14.494 Atomic orbital electron populations 1.21499 0.95224 0.99381 1.01446 1.19149 0.95147 0.96801 0.91017 0.93694 1.21237 1.32146 1.12539 0.91322 0.93626 1.25613 0.95032 0.95659 1.01495 1.69949 1.37050 1.23298 1.24434 0.85596 0.78501 0.78795 0.79049 1.19710 1.20017 1.20240 1.23325 0.71213 0.88067 0.89280 1.90335 1.42044 1.18565 1.86126 1.20688 1.05432 0.94560 0.96273 1.21731 0.94319 1.01204 0.91841 1.21473 0.99344 0.93248 0.98434 1.21672 0.95316 0.94895 0.97430 1.20957 1.05408 0.85792 0.95978 1.98370 1.94793 1.11590 1.98655 1.21470 0.96593 0.92935 0.97920 0.90692 0.93896 0.95861 0.92478 0.84603 0.80516 0.81167 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.95 71.98 0.64 -5.04 15 2 C 0.00 -0.12 2.07 -12.29 -0.03 -0.14 15 3 H 0.05 2.33 6.48 -2.39 -0.02 2.31 15 4 C -0.53 -30.81 8.32 25.60 0.21 -30.59 15 5 H 0.05 2.75 7.14 -2.91 -0.02 2.73 15 6 C 0.02 1.21 5.30 84.66 0.45 1.66 15 7 N -0.91 -51.21 11.33 21.45 0.24 -50.97 15 8 Si 0.96 44.53 29.54 68.60 2.03 46.55 15 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 12 C 0.40 18.50 6.17 28.03 0.17 18.67 15 13 O -0.49 -25.08 15.95 -2.95 -0.05 -25.13 15 14 C -0.17 -6.08 5.87 -20.15 -0.12 -6.20 15 15 C -0.07 -2.09 9.60 22.58 0.22 -1.87 15 16 C -0.11 -2.13 10.03 22.22 0.22 -1.91 15 17 C -0.07 -1.48 9.82 22.37 0.22 -1.26 15 18 C -0.05 -1.42 6.31 22.28 0.14 -1.28 15 19 Cl -0.06 -1.50 28.95 -2.72 -0.08 -1.58 15 20 C -0.07 -2.30 9.14 22.60 0.21 -2.09 15 21 H 0.07 3.92 6.08 -2.39 -0.01 3.90 15 22 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.02 1.11 8.14 -2.38 -0.02 1.09 15 24 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 25 H 0.14 3.87 7.65 -2.91 -0.02 3.85 15 26 H 0.18 2.02 8.06 -2.91 -0.02 2.00 15 27 H 0.17 2.13 8.06 -2.92 -0.02 2.11 15 28 H 0.13 4.73 6.37 -2.91 -0.02 4.71 15 Total: -1.00 -64.44 263.08 5.66 -58.78 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.17 Total: 2.40 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 2.34 Total: -30.05 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.24 Total: -50.97 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -64.44 5.66 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.892 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds