Wall clock time and date at job start Mon Mar 30 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50698 * 109.47378 * 239.99747 * 2 1 3 5 5 H 1.07994 * 120.00144 * 275.08494 * 4 2 1 6 6 C 1.37877 * 119.99425 * 95.07930 * 4 2 1 7 7 N 1.31520 * 119.99699 * 184.91050 * 6 4 2 8 8 Si 1.86797 * 120.00447 * 4.91773 * 6 4 2 9 9 H 1.48497 * 109.47311 * 84.82595 * 8 6 4 10 10 H 1.48506 * 109.47037 * 204.82484 * 8 6 4 11 11 H 1.48498 * 109.47072 * 324.82172 * 8 6 4 12 12 C 1.50707 * 109.46994 * 120.00064 * 2 1 3 13 13 O 1.21253 * 120.00029 * 95.00214 * 12 2 1 14 14 C 1.47171 * 119.99875 * 275.00148 * 12 2 1 15 15 C 1.39873 * 120.16595 * 180.02562 * 14 12 2 16 16 C 1.37867 * 119.85123 * 179.72415 * 15 14 12 17 17 C 1.38409 * 120.18871 * 0.25073 * 16 15 14 18 18 C 1.38491 * 120.33632 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.92894 * 179.97438 * 18 17 16 20 20 C 1.38032 * 120.14333 * 0.02562 * 18 17 16 21 21 H 1.09005 * 109.47063 * 175.03017 * 1 2 3 22 22 H 1.09000 * 109.47395 * 295.03007 * 1 2 3 23 23 H 1.09005 * 109.47349 * 55.03306 * 1 2 3 24 24 H 0.96996 * 119.99881 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.06765 * 359.97438 * 15 14 12 26 26 H 1.08001 * 119.90708 * 180.27825 * 16 15 14 27 27 H 1.08000 * 119.82779 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.09302 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1342 -1.7856 -1.2294 6 6 2.3618 0.0123 -2.3574 7 7 2.7077 -0.6129 -3.4616 8 14 2.3172 1.8793 -2.3160 9 1 3.6029 2.3934 -1.7795 10 1 2.1111 2.4001 -3.6913 11 1 1.2020 2.3285 -1.4443 12 6 2.0323 -0.7105 1.2305 13 8 2.3207 -1.8869 1.1761 14 6 2.1728 0.0237 2.4983 15 6 2.6392 -0.6321 3.6423 16 6 2.7737 0.0634 4.8251 17 6 2.4437 1.4063 4.8843 18 6 1.9758 2.0619 3.7577 19 17 1.5645 3.7462 3.8441 20 6 1.8348 1.3788 2.5666 21 1 -0.3633 -1.0239 -0.0890 22 1 -0.3634 0.4348 0.9311 23 1 -0.3634 0.5890 -0.8422 24 1 2.9391 -0.1044 -4.2546 25 1 2.8971 -1.6798 3.5981 26 1 3.1380 -0.4410 5.7079 27 1 2.5518 1.9455 5.8138 28 1 1.4694 1.8907 1.6887 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:35 Heat of formation + Delta-G solvation = -27.812467 kcal Electronic energy + Delta-G solvation = -14307.936398 eV Core-core repulsion = 11735.570804 eV Total energy + Delta-G solvation = -2572.365594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72853 -37.89545 -36.39219 -33.83607 -31.84125 -30.69117 -30.60755 -25.32546 -24.61600 -22.75387 -21.58809 -18.94645 -17.47876 -16.59579 -15.62017 -15.54442 -14.59072 -14.46524 -14.03179 -13.78398 -13.46119 -13.13934 -12.48829 -12.30131 -11.90670 -11.63651 -11.44248 -11.31625 -11.14525 -11.02111 -10.77166 -10.34899 -9.85435 -9.20670 -9.00299 -8.77598 -8.76191 -8.54085 -6.12678 -4.13588 0.79483 1.18338 2.05890 2.89204 3.22539 3.28758 3.31873 3.88696 4.34138 4.53685 4.74020 4.94139 5.18156 5.22434 5.31175 5.55927 5.70114 6.03100 6.11433 6.15757 6.24028 6.36107 6.50576 6.53534 6.69937 6.88942 7.15493 7.55522 8.30692 8.50447 9.00982 9.46818 11.00274 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025268 B = 0.008458 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.861616 B = 3309.689713 C = 4076.877918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 H 0.053 0.947 4 C -0.509 4.509 5 H 0.087 0.913 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.866 3.134 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.401 3.599 13 O -0.443 6.443 14 C -0.140 4.140 15 C -0.067 4.067 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.048 4.048 19 Cl -0.073 7.073 20 C -0.067 4.067 21 H 0.054 0.946 22 H 0.028 0.972 23 H 0.056 0.944 24 H 0.266 0.734 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 7.029 16.094 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.071 0.929 4 C -0.546 4.546 5 H 0.105 0.895 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.693 3.307 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.187 1.187 12 C 0.277 3.723 13 O -0.316 6.316 14 C -0.142 4.142 15 C -0.085 4.085 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.075 4.075 19 Cl -0.045 7.045 20 C -0.085 4.085 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.754 6.569 15.853 17.250 hybrid contribution 0.046 1.352 -0.076 1.355 sum -1.708 7.921 15.778 17.736 Atomic orbital electron populations 1.21895 0.96167 1.01621 0.99325 1.19586 0.94452 0.97230 0.93450 0.92927 1.20827 1.43702 0.96186 0.93895 0.89501 1.25029 0.94422 0.98087 0.95251 1.69887 1.45660 1.35811 1.01651 0.87018 0.79270 0.86648 0.77751 1.19865 1.21086 1.18666 1.23159 0.73216 0.88070 0.87827 1.90399 1.37431 1.17772 1.86048 1.21155 1.01575 0.94301 0.97134 1.21611 0.94588 1.00854 0.91484 1.21074 1.00998 0.93611 0.98343 1.21194 0.97967 0.94842 0.97281 1.20841 1.04993 0.85829 0.95827 1.98364 1.92335 1.15166 1.98604 1.21529 0.96499 0.93588 0.96921 0.92728 0.95284 0.92452 0.92439 0.84353 0.84773 0.84911 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.16 37.16 0.34 -2.34 15 2 C -0.03 -0.64 1.59 -92.92 -0.15 -0.78 15 3 H 0.05 1.16 3.90 -51.93 -0.20 0.96 15 4 C -0.51 -14.31 8.55 -34.44 -0.29 -14.60 15 5 H 0.09 2.76 7.50 -52.49 -0.39 2.36 15 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 7 N -0.89 -27.10 13.96 55.43 0.77 -26.33 15 8 Si 0.87 20.62 26.99 -169.99 -4.59 16.03 15 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.26 -5.74 6.82 56.52 0.39 -5.36 15 12 C 0.40 8.63 6.22 -30.68 -0.19 8.44 15 13 O -0.44 -10.70 15.92 5.58 0.09 -10.61 15 14 C -0.14 -2.42 5.87 -105.07 -0.62 -3.04 15 15 C -0.07 -0.98 9.60 -39.11 -0.38 -1.35 15 16 C -0.12 -1.40 10.03 -39.65 -0.40 -1.80 15 17 C -0.09 -1.08 9.82 -39.42 -0.39 -1.46 15 18 C -0.05 -0.65 6.31 -39.56 -0.25 -0.90 15 19 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.40 15 20 C -0.07 -1.04 9.13 -39.06 -0.36 -1.40 15 21 H 0.05 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.03 0.49 8.13 -51.93 -0.42 0.07 15 23 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 25 H 0.14 1.96 7.65 -52.49 -0.40 1.56 15 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 15 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.14 2.27 6.48 -52.49 -0.34 1.93 15 LS Contribution 262.98 15.07 3.96 3.96 Total: -1.00 -30.74 262.98 -6.64 -37.38 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.60 Total: -0.81 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.77 Total: -17.22 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.03 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.74 -6.64 -37.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.569 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds