Wall clock time and date at job start Mon Mar 30 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50698 * 109.47378 * 239.99747 * 2 1 3 5 5 H 1.07994 * 120.00144 * 275.08494 * 4 2 1 6 6 C 1.37877 * 119.99425 * 95.07930 * 4 2 1 7 7 N 1.31520 * 119.99699 * 184.91050 * 6 4 2 8 8 Si 1.86797 * 120.00447 * 4.91773 * 6 4 2 9 9 H 1.48497 * 109.47311 * 84.82595 * 8 6 4 10 10 H 1.48506 * 109.47037 * 204.82484 * 8 6 4 11 11 H 1.48498 * 109.47072 * 324.82172 * 8 6 4 12 12 C 1.50707 * 109.46994 * 120.00064 * 2 1 3 13 13 O 1.21253 * 120.00029 * 95.00214 * 12 2 1 14 14 C 1.47171 * 119.99875 * 275.00148 * 12 2 1 15 15 C 1.39873 * 120.16595 * 180.02562 * 14 12 2 16 16 C 1.37867 * 119.85123 * 179.72415 * 15 14 12 17 17 C 1.38409 * 120.18871 * 0.25073 * 16 15 14 18 18 C 1.38491 * 120.33632 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.92894 * 179.97438 * 18 17 16 20 20 C 1.38032 * 120.14333 * 0.02562 * 18 17 16 21 21 H 1.09005 * 109.47063 * 175.03017 * 1 2 3 22 22 H 1.09000 * 109.47395 * 295.03007 * 1 2 3 23 23 H 1.09005 * 109.47349 * 55.03306 * 1 2 3 24 24 H 0.96996 * 119.99881 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.06765 * 359.97438 * 15 14 12 26 26 H 1.08001 * 119.90708 * 180.27825 * 16 15 14 27 27 H 1.08000 * 119.82779 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.09302 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1342 -1.7856 -1.2294 6 6 2.3618 0.0123 -2.3574 7 7 2.7077 -0.6129 -3.4616 8 14 2.3172 1.8793 -2.3160 9 1 3.6029 2.3934 -1.7795 10 1 2.1111 2.4001 -3.6913 11 1 1.2020 2.3285 -1.4443 12 6 2.0323 -0.7105 1.2305 13 8 2.3207 -1.8869 1.1761 14 6 2.1728 0.0237 2.4983 15 6 2.6392 -0.6321 3.6423 16 6 2.7737 0.0634 4.8251 17 6 2.4437 1.4063 4.8843 18 6 1.9758 2.0619 3.7577 19 17 1.5645 3.7462 3.8441 20 6 1.8348 1.3788 2.5666 21 1 -0.3633 -1.0239 -0.0890 22 1 -0.3634 0.4348 0.9311 23 1 -0.3634 0.5890 -0.8422 24 1 2.9391 -0.1044 -4.2546 25 1 2.8971 -1.6798 3.5981 26 1 3.1380 -0.4410 5.7079 27 1 2.5518 1.9455 5.8138 28 1 1.4694 1.8907 1.6887 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:35 Heat of formation + Delta-G solvation = -46.498058 kcal Electronic energy + Delta-G solvation = -14308.746666 eV Core-core repulsion = 11735.570804 eV Total energy + Delta-G solvation = -2573.175862 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09254 -39.28649 -37.39214 -35.77075 -33.66743 -32.04819 -31.71074 -27.31652 -26.07755 -23.91020 -23.00363 -20.49106 -19.28654 -18.11677 -17.14056 -16.71177 -16.15225 -15.89141 -15.55188 -15.17211 -14.85414 -14.46864 -14.35937 -13.98822 -13.21224 -13.00693 -12.91692 -12.63340 -12.50889 -12.46828 -12.17166 -11.99809 -11.78898 -11.25512 -10.79799 -10.33999 -10.09719 -9.81314 -8.31680 -6.39316 -0.39556 0.13982 1.06463 1.34135 1.35209 1.45781 1.50850 2.32311 2.67253 2.98167 3.19794 3.75643 3.96239 4.10459 4.26251 4.35653 4.45640 4.50218 4.72356 4.79591 4.84020 5.06156 5.11043 5.19774 5.34955 5.47544 5.56094 5.67860 6.23209 6.70192 6.75425 7.25251 8.85817 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025268 B = 0.008458 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.861616 B = 3309.689713 C = 4076.877918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.034 4.034 3 H 0.070 0.930 4 C -0.520 4.520 5 H 0.027 0.973 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.935 3.065 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.225 1.225 12 C 0.401 3.599 13 O -0.490 6.490 14 C -0.167 4.167 15 C -0.073 4.073 16 C -0.106 4.106 17 C -0.074 4.074 18 C -0.053 4.053 19 Cl -0.061 7.061 20 C -0.073 4.073 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.268 0.732 25 H 0.133 0.867 26 H 0.175 0.825 27 H 0.170 0.830 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 10.139 19.343 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 H 0.088 0.912 4 C -0.557 4.557 5 H 0.046 0.954 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.757 3.243 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.148 1.148 12 C 0.281 3.719 13 O -0.367 6.367 14 C -0.169 4.169 15 C -0.091 4.091 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.080 4.080 19 Cl -0.032 7.032 20 C -0.092 4.092 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.151 0.849 26 H 0.193 0.807 27 H 0.188 0.812 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.124 9.691 19.132 21.552 hybrid contribution 0.170 0.327 -0.988 1.054 sum -1.954 10.018 18.145 20.818 Atomic orbital electron populations 1.21781 0.93975 1.01194 1.01494 1.19625 0.96192 0.97439 0.92122 0.91243 1.20975 1.44073 0.93975 0.96707 0.95433 1.26026 0.93750 1.04367 0.94338 1.70066 1.47532 1.38400 1.02738 0.85912 0.80902 0.78915 0.78584 1.18790 1.20884 1.14804 1.23249 0.71725 0.87567 0.89380 1.90380 1.39766 1.19576 1.86986 1.20652 1.05442 0.95051 0.95707 1.21723 0.94471 1.00963 0.91976 1.21465 0.99204 0.93591 0.98156 1.21675 0.94975 0.94722 0.97871 1.20935 1.04910 0.86507 0.95638 1.98374 1.92237 1.14046 1.98537 1.21465 0.96941 0.92844 0.97967 0.94281 0.91390 0.92154 0.92272 0.84895 0.80736 0.81211 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.16 71.98 0.66 -4.40 15 2 C -0.03 -1.60 1.59 -12.29 -0.02 -1.62 15 3 H 0.07 2.96 3.90 -2.39 -0.01 2.95 15 4 C -0.52 -30.72 8.55 25.60 0.22 -30.50 15 5 H 0.03 1.90 7.50 -2.91 -0.02 1.87 15 6 C 0.01 0.73 5.47 84.65 0.46 1.19 15 7 N -0.95 -60.24 13.96 21.45 0.30 -59.94 15 8 Si 0.94 42.19 26.99 68.60 1.85 44.04 15 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.23 -8.78 6.82 99.48 0.68 -8.11 15 12 C 0.40 17.66 6.22 28.04 0.17 17.84 15 13 O -0.49 -25.11 15.92 -2.95 -0.05 -25.15 15 14 C -0.17 -5.59 5.87 -20.15 -0.12 -5.70 15 15 C -0.07 -1.99 9.60 22.58 0.22 -1.77 15 16 C -0.11 -1.95 10.03 22.22 0.22 -1.73 15 17 C -0.07 -1.30 9.82 22.37 0.22 -1.08 15 18 C -0.05 -1.22 6.31 22.28 0.14 -1.07 15 19 Cl -0.06 -1.25 28.95 -2.72 -0.08 -1.33 15 20 C -0.07 -2.10 9.13 22.60 0.21 -1.89 15 21 H 0.04 1.64 8.14 -2.38 -0.02 1.62 15 22 H 0.07 2.17 8.13 -2.39 -0.02 2.15 15 23 H 0.06 2.34 8.14 -2.38 -0.02 2.32 15 24 H 0.27 15.80 8.31 -92.71 -0.77 15.02 15 25 H 0.13 3.71 7.65 -2.91 -0.02 3.69 15 26 H 0.18 1.84 8.06 -2.91 -0.02 1.82 15 27 H 0.17 1.81 8.06 -2.91 -0.02 1.79 15 28 H 0.14 4.03 6.48 -2.91 -0.02 4.01 15 Total: -1.00 -72.18 262.98 5.55 -66.62 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.14 Total: 6.50 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 2.38 Total: -30.74 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.85 Total: 44.04 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -72.18 5.55 -66.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.125 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds