Wall clock time and date at job start Mon Mar 30 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.47191 * 30.00205 * 3 2 1 6 6 H 1.48505 * 109.47205 * 149.99894 * 3 2 1 7 7 C 1.38796 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00005 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00125 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00100 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47140 * 55.00279 * 10 9 7 12 12 C 1.50706 * 109.47156 * 294.99949 * 10 9 7 13 13 O 1.20825 * 119.99859 * 109.99546 * 12 10 9 14 14 O 1.34224 * 120.00295 * 290.00505 * 12 10 9 15 15 C 1.50698 * 109.46920 * 175.00178 * 10 9 7 16 16 C 1.38235 * 120.00091 * 59.73126 * 15 10 9 17 17 C 1.38237 * 119.99835 * 179.81086 * 16 15 10 18 18 C 1.38232 * 120.00087 * 0.38942 * 17 16 15 19 19 C 1.38233 * 119.99941 * 359.85990 * 18 17 16 20 20 C 1.38234 * 119.99838 * 239.99465 * 15 10 9 21 21 H 0.96998 * 119.99867 * 359.97438 * 1 2 3 22 22 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 23 23 H 1.08000 * 119.99870 * 359.97438 * 16 15 10 24 24 H 1.08004 * 119.99887 * 180.22768 * 17 16 15 25 25 H 1.08004 * 120.00260 * 179.83677 * 18 17 16 26 26 H 1.08007 * 119.99911 * 179.97438 * 19 18 17 27 27 H 1.08001 * 120.00081 * 359.97438 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 1 3.5689 -3.4449 -0.8414 12 6 3.5829 -3.5833 1.2882 13 8 2.6114 -4.3016 1.2813 14 8 4.2135 -3.3184 2.4431 15 6 5.5676 -3.2335 -0.1242 16 6 6.4346 -2.7367 0.8311 17 6 7.7928 -2.9684 0.7191 18 6 8.2848 -3.6900 -0.3524 19 6 7.4184 -4.1823 -1.3104 20 6 6.0598 -3.9540 -1.1964 21 1 -0.4850 0.8400 0.0004 22 1 3.8533 -3.7249 3.2432 23 1 6.0505 -2.1699 1.6663 24 1 8.4698 -2.5834 1.4674 25 1 9.3463 -3.8688 -0.4413 26 1 7.8029 -4.7458 -2.1478 27 1 5.3829 -4.3388 -1.9447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034079466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:48 Heat of formation + Delta-G solvation = -74.329333 kcal Electronic energy + Delta-G solvation = -14288.575623 eV Core-core repulsion = 11716.236613 eV Total energy + Delta-G solvation = -2572.339011 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.88957 -38.69690 -35.56139 -32.84655 -32.54356 -30.71291 -27.76932 -25.68683 -22.62557 -22.05483 -20.84350 -17.92976 -17.68697 -16.48177 -16.09297 -15.49458 -15.06995 -14.99410 -14.49406 -13.54994 -13.16823 -13.05937 -12.90873 -12.71316 -12.44632 -11.44960 -11.23946 -11.15124 -11.01492 -10.85861 -10.57698 -10.31195 -9.98134 -9.12798 -8.90084 -8.70034 -8.41542 -7.20128 -6.37600 -4.16227 1.37791 1.59984 2.37084 3.08139 3.21357 3.33804 3.40273 3.51261 4.10027 4.19353 4.54314 4.90349 4.99246 5.04655 5.13737 5.32586 5.39909 5.69054 5.81819 5.97325 6.12423 6.28800 6.59984 6.68843 6.81563 6.97512 7.16420 7.85548 8.38598 8.45060 9.05282 10.71710 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.008570 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.036478 B = 3266.468243 C = 3688.391803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.099 3.901 3 Si 0.854 3.146 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.097 0.903 9 S -0.134 6.134 10 C -0.022 4.022 11 H 0.124 0.876 12 C 0.504 3.496 13 O -0.517 6.517 14 O -0.505 6.505 15 C -0.065 4.065 16 C -0.083 4.083 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.127 4.127 20 C -0.103 4.103 21 H 0.272 0.728 22 H 0.402 0.598 23 H 0.139 0.861 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.698 -5.559 1.218 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.111 4.111 3 Si 0.679 3.321 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.115 0.885 9 S 0.098 5.902 10 C -0.150 4.150 11 H 0.142 0.858 12 C 0.343 3.657 13 O -0.405 6.405 14 O -0.316 6.316 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.123 4.123 21 H 0.083 0.917 22 H 0.259 0.741 23 H 0.157 0.843 24 H 0.139 0.861 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.094 -4.535 0.833 15.782 hybrid contribution -1.152 -0.375 0.406 1.278 sum 13.941 -4.910 1.238 14.833 Atomic orbital electron populations 1.69939 1.05887 1.27853 1.47018 1.24730 0.94479 0.98790 0.93056 0.86798 0.81770 0.83566 0.79976 1.19032 1.19611 1.16079 1.22364 0.87137 0.98202 1.59756 0.88464 1.84637 1.11509 0.97588 1.96425 1.21888 0.95740 1.02785 0.94621 0.85826 1.23087 0.80547 0.76505 0.85543 1.90686 1.26361 1.36208 1.87294 1.84521 1.58123 1.71074 1.17865 1.19209 0.92282 0.98830 0.96278 1.21267 0.92739 0.97535 0.98720 1.21125 0.95299 0.99541 0.98400 1.21127 0.99368 0.98604 0.94933 1.21028 0.93152 1.00952 0.99327 1.21047 0.95723 0.98219 0.97300 0.91739 0.74091 0.84336 0.86086 0.86411 0.86150 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.97 55.49 0.78 -25.46 15 2 C 0.10 2.85 5.50 -17.43 -0.10 2.76 15 3 Si 0.85 20.80 27.74 -169.99 -4.71 16.09 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 5 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.24 -5.58 6.74 56.52 0.38 -5.20 15 7 C -0.53 -15.11 9.65 30.94 0.30 -14.81 15 8 H 0.10 3.08 7.98 -52.48 -0.42 2.66 15 9 S -0.13 -3.16 18.45 -107.50 -1.98 -5.14 15 10 C -0.02 -0.44 2.71 -29.03 -0.08 -0.52 15 11 H 0.12 2.51 7.86 -51.92 -0.41 2.10 15 12 C 0.50 10.30 6.62 36.01 0.24 10.54 15 13 O -0.52 -12.09 17.85 -18.75 -0.33 -12.42 15 14 O -0.51 -8.34 11.18 -39.24 -0.44 -8.78 15 15 C -0.06 -1.09 4.77 -104.63 -0.50 -1.59 15 16 C -0.08 -1.30 8.30 -39.58 -0.33 -1.62 15 17 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 15 18 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 15 19 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 15 20 C -0.10 -1.50 9.67 -39.58 -0.38 -1.88 15 21 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.40 4.75 9.10 45.56 0.41 5.16 15 23 H 0.14 2.23 6.87 -52.49 -0.36 1.87 15 24 H 0.12 1.25 8.06 -52.48 -0.42 0.83 15 25 H 0.12 1.06 8.06 -52.48 -0.42 0.63 15 26 H 0.12 1.16 8.06 -52.48 -0.42 0.73 15 27 H 0.12 1.62 7.95 -52.49 -0.42 1.21 15 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -33.04 259.72 -6.44 -39.48 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -1.61 Total: 5.24 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -2.04 Total: -12.92 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.78 Total: -25.46 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.77 Total: -21.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.98 Total: -5.14 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.04 -6.44 -39.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034079466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.848 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds