Wall clock time and date at job start Mon Mar 30 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00350 * 3 2 1 6 6 H 1.48499 * 109.46799 * 60.00087 * 3 2 1 7 7 C 1.38804 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99733 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99990 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47444 * 305.00368 * 10 9 7 12 12 C 1.50701 * 109.47171 * 65.00131 * 10 9 7 13 13 O 1.20826 * 119.99733 * 250.00048 * 12 10 9 14 14 O 1.34225 * 120.00284 * 69.99807 * 12 10 9 15 15 C 1.50702 * 109.47474 * 185.00226 * 10 9 7 16 16 C 1.38234 * 120.00271 * 119.99718 * 15 10 9 17 17 C 1.38230 * 119.99880 * 179.97438 * 16 15 10 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99485 * 299.97845 * 15 10 9 21 21 H 0.96994 * 120.00241 * 359.97438 * 1 2 3 22 22 H 0.96692 * 117.00629 * 180.02562 * 14 12 10 23 23 H 1.08001 * 119.99769 * 359.97438 * 16 15 10 24 24 H 1.08000 * 120.00376 * 180.02562 * 17 16 15 25 25 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 26 26 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 27 27 H 1.07997 * 120.00489 * 0.02562 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5160 -3.8913 -0.0029 11 1 3.1733 -3.6726 -0.8445 12 6 3.2867 -3.7554 1.2849 13 8 4.3946 -3.2732 1.2778 14 8 2.7426 -4.1699 2.4397 15 6 1.9911 -5.2984 -0.1281 16 6 2.3685 -6.0841 -1.2010 17 6 1.8874 -7.3749 -1.3155 18 6 1.0294 -7.8804 -0.3567 19 6 0.6528 -7.0951 0.7168 20 6 1.1325 -5.8036 0.8303 21 1 -0.4850 0.8400 0.0004 22 1 3.2749 -4.0618 3.2397 23 1 3.0392 -5.6893 -1.9499 24 1 2.1826 -7.9890 -2.1535 25 1 0.6500 -8.8874 -0.4484 26 1 -0.0179 -7.4898 1.4657 27 1 0.8376 -5.1898 1.6685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034079467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:51 Heat of formation + Delta-G solvation = -76.150646 kcal Electronic energy + Delta-G solvation = -14248.885927 eV Core-core repulsion = 11676.467938 eV Total energy + Delta-G solvation = -2572.417989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81578 -38.60974 -35.51184 -32.75988 -32.52288 -30.61649 -27.67471 -25.54977 -22.53377 -21.96949 -20.73404 -17.90248 -17.62145 -16.40782 -16.02022 -15.43190 -14.90937 -14.87775 -14.42909 -13.64460 -13.17791 -12.95977 -12.66403 -12.62858 -12.23817 -11.27326 -11.13974 -11.02832 -10.89959 -10.78094 -10.68129 -10.25148 -9.97838 -9.19655 -8.73525 -8.58551 -8.26025 -6.79460 -6.36482 -4.11571 1.50662 1.69491 2.58728 3.16987 3.19009 3.26976 3.42636 3.59444 4.08940 4.21630 4.86727 5.01225 5.13148 5.21522 5.30625 5.43608 5.49440 5.78782 5.91597 6.06688 6.21943 6.38540 6.69087 6.78683 6.92663 7.01881 7.26441 7.53740 8.27207 8.47473 9.11972 10.71098 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.007564 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.250808 B = 3700.693315 C = 3986.093445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.082 0.918 9 S -0.048 6.048 10 C -0.053 4.053 11 H 0.118 0.882 12 C 0.505 3.495 13 O -0.527 6.527 14 O -0.504 6.504 15 C -0.058 4.058 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.084 4.084 21 H 0.270 0.730 22 H 0.399 0.601 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -12.262 1.129 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.132 4.132 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.687 4.687 8 H 0.100 0.900 9 S 0.185 5.815 10 C -0.181 4.181 11 H 0.136 0.864 12 C 0.344 3.656 13 O -0.417 6.417 14 O -0.314 6.314 15 C -0.059 4.059 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.103 4.103 21 H 0.080 0.920 22 H 0.257 0.743 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.843 -12.205 0.738 12.256 hybrid contribution 2.128 1.513 0.429 2.646 sum 2.970 -10.692 1.167 11.158 Atomic orbital electron populations 1.69989 1.05960 1.27745 1.46715 1.24993 0.95057 0.99207 0.93939 0.86073 0.79979 0.81365 0.77999 1.19270 1.20347 1.20414 1.23014 0.95357 0.90821 1.59477 0.89983 1.85188 1.03489 0.97252 1.95576 1.22190 1.03601 0.98363 0.93986 0.86415 1.23292 0.83773 0.72811 0.85681 1.90651 1.21075 1.42516 1.87455 1.84550 1.51507 1.77518 1.17833 1.19189 0.98101 0.92628 0.96026 1.21029 1.00062 0.94064 0.97453 1.21005 0.98698 0.95531 0.99269 1.21104 0.98531 0.99634 0.95018 1.21123 1.00472 0.94342 0.98383 1.21273 0.94962 0.95242 0.98838 0.92011 0.74337 0.86019 0.86282 0.86502 0.86137 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.22 55.49 0.73 -24.54 15 2 C 0.08 2.18 5.49 -17.43 -0.10 2.08 15 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.54 -15.24 9.10 30.94 0.28 -14.96 15 8 H 0.08 2.36 7.75 -52.48 -0.41 1.95 15 9 S -0.05 -1.21 20.49 -107.50 -2.20 -3.41 15 10 C -0.05 -1.10 2.71 -29.03 -0.08 -1.18 15 11 H 0.12 2.45 7.86 -51.91 -0.41 2.04 15 12 C 0.51 10.47 6.62 36.01 0.24 10.71 15 13 O -0.53 -12.21 17.85 -18.75 -0.33 -12.54 15 14 O -0.50 -8.59 11.16 -39.25 -0.44 -9.02 15 15 C -0.06 -1.03 4.77 -104.62 -0.50 -1.53 15 16 C -0.11 -1.63 9.67 -39.59 -0.38 -2.02 15 17 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 15 18 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 15 19 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 15 20 C -0.08 -1.39 8.31 -39.58 -0.33 -1.71 15 21 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.40 4.85 9.10 45.56 0.41 5.27 15 23 H 0.12 1.69 7.95 -52.49 -0.42 1.27 15 24 H 0.12 1.23 8.06 -52.49 -0.42 0.80 15 25 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 27 H 0.14 2.39 6.84 -52.49 -0.36 2.03 15 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -32.66 262.38 -6.95 -39.61 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -1.58 Total: 4.09 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.06 Total: -14.74 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.73 Total: -24.54 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.77 Total: -21.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.20 Total: -3.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.66 -6.95 -39.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034079467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.538 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds