Wall clock time and date at job start Mon Mar 30 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00350 * 3 2 1 6 6 H 1.48499 * 109.46799 * 60.00087 * 3 2 1 7 7 C 1.38804 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99733 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99990 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47444 * 305.00368 * 10 9 7 12 12 C 1.50701 * 109.47171 * 65.00131 * 10 9 7 13 13 O 1.20826 * 119.99733 * 250.00048 * 12 10 9 14 14 O 1.34225 * 120.00284 * 69.99807 * 12 10 9 15 15 C 1.50702 * 109.47474 * 185.00226 * 10 9 7 16 16 C 1.38234 * 120.00271 * 119.99718 * 15 10 9 17 17 C 1.38230 * 119.99880 * 179.97438 * 16 15 10 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99485 * 299.97845 * 15 10 9 21 21 H 0.96994 * 120.00241 * 359.97438 * 1 2 3 22 22 H 0.96692 * 117.00629 * 180.02562 * 14 12 10 23 23 H 1.08001 * 119.99769 * 359.97438 * 16 15 10 24 24 H 1.08000 * 120.00376 * 180.02562 * 17 16 15 25 25 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 26 26 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 27 27 H 1.07997 * 120.00489 * 0.02562 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0019 10 6 2.5160 -3.8913 -0.0029 11 1 3.1733 -3.6726 -0.8445 12 6 3.2867 -3.7554 1.2849 13 8 4.3946 -3.2732 1.2778 14 8 2.7426 -4.1699 2.4397 15 6 1.9911 -5.2984 -0.1281 16 6 2.3685 -6.0841 -1.2010 17 6 1.8874 -7.3749 -1.3155 18 6 1.0294 -7.8804 -0.3567 19 6 0.6528 -7.0951 0.7168 20 6 1.1325 -5.8036 0.8303 21 1 -0.4850 0.8400 0.0004 22 1 3.2749 -4.0618 3.2397 23 1 3.0392 -5.6893 -1.9499 24 1 2.1826 -7.9890 -2.1535 25 1 0.6500 -8.8874 -0.4484 26 1 -0.0179 -7.4898 1.4657 27 1 0.8376 -5.1898 1.6685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034079467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:50 Heat of formation + Delta-G solvation = -96.980283 kcal Electronic energy + Delta-G solvation = -14249.789167 eV Core-core repulsion = 11676.467938 eV Total energy + Delta-G solvation = -2573.321229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36712 -39.84062 -37.09631 -34.72115 -34.04450 -31.72790 -29.10677 -27.65870 -23.82076 -23.20264 -22.15013 -19.87170 -19.20327 -17.78045 -17.59866 -16.99626 -16.82778 -16.15688 -15.87791 -15.25292 -14.62289 -14.35022 -14.15622 -13.98325 -13.56168 -13.24994 -13.01315 -12.75190 -12.53801 -12.20002 -11.91191 -11.87975 -11.70019 -11.24825 -10.61789 -9.74388 -9.55867 -8.85047 -8.48125 -6.27008 0.25688 0.57944 0.93404 1.29053 1.32091 1.44838 1.70753 2.10496 2.19089 2.87292 3.02564 3.12976 3.58579 3.79373 4.18561 4.25731 4.38130 4.57831 4.71167 4.78617 5.08350 5.25595 5.33614 5.53242 5.61614 5.68549 5.73377 6.09672 6.16673 6.96111 6.98442 8.60581 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.007564 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.250808 B = 3700.693315 C = 3986.093445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.066 0.934 9 S -0.085 6.085 10 C -0.038 4.038 11 H 0.108 0.892 12 C 0.509 3.491 13 O -0.558 6.558 14 O -0.493 6.493 15 C -0.086 4.086 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.101 4.101 21 H 0.276 0.724 22 H 0.422 0.578 23 H 0.128 0.872 24 H 0.153 0.847 25 H 0.156 0.844 26 H 0.147 0.853 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -13.883 0.996 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.707 4.707 8 H 0.084 0.916 9 S 0.148 5.852 10 C -0.167 4.167 11 H 0.126 0.874 12 C 0.349 3.651 13 O -0.450 6.450 14 O -0.305 6.305 15 C -0.087 4.087 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.121 4.121 21 H 0.085 0.915 22 H 0.282 0.718 23 H 0.146 0.854 24 H 0.171 0.829 25 H 0.174 0.826 26 H 0.165 0.835 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.786 -13.837 0.630 13.874 hybrid contribution 2.130 1.821 0.501 2.847 sum 2.917 -12.016 1.131 12.417 Atomic orbital electron populations 1.70076 1.07303 1.28955 1.47253 1.25896 0.95947 1.02613 0.93256 0.85089 0.78194 0.77094 0.78810 1.19673 1.18905 1.19229 1.23203 0.94895 0.92724 1.59924 0.91551 1.84994 1.06763 0.97577 1.95874 1.22032 1.01462 0.99213 0.93971 0.87404 1.23226 0.83263 0.72082 0.86520 1.90630 1.22418 1.43961 1.88022 1.84502 1.51456 1.76562 1.17954 1.19101 1.00287 0.91181 0.98147 1.21242 1.00514 0.95165 0.96857 1.21417 0.97753 0.94583 1.00235 1.21591 0.96971 1.00984 0.93589 1.21451 1.00256 0.93124 0.99485 1.21252 0.95710 0.96639 0.98451 0.91459 0.71751 0.85390 0.82916 0.82620 0.83501 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.03 13.22 21.65 0.29 -52.74 15 2 C 0.03 1.66 5.49 84.86 0.47 2.13 15 3 Si 0.99 44.70 29.55 68.60 2.03 46.72 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.56 -32.59 9.10 67.96 0.62 -31.97 15 8 H 0.07 3.96 7.75 -2.91 -0.02 3.93 15 9 S -0.09 -4.45 20.49 -56.49 -1.16 -5.61 15 10 C -0.04 -1.62 2.71 29.10 0.08 -1.54 15 11 H 0.11 4.70 7.86 -2.39 -0.02 4.68 15 12 C 0.51 21.51 6.62 71.24 0.47 21.98 15 13 O -0.56 -26.39 17.85 21.96 0.39 -26.00 15 14 O -0.49 -16.81 11.16 -51.37 -0.57 -17.39 15 15 C -0.09 -3.03 4.77 -19.87 -0.09 -3.13 15 16 C -0.12 -3.47 9.67 22.27 0.22 -3.26 15 17 C -0.12 -2.77 10.05 22.27 0.22 -2.54 15 18 C -0.11 -2.37 10.05 22.27 0.22 -2.14 15 19 C -0.13 -3.10 10.05 22.27 0.22 -2.87 15 20 C -0.10 -3.27 8.31 22.27 0.18 -3.08 15 21 H 0.28 15.01 8.31 -92.71 -0.77 14.24 15 22 H 0.42 9.98 9.10 -74.06 -0.67 9.30 15 23 H 0.13 3.47 7.95 -2.91 -0.02 3.44 15 24 H 0.15 2.42 8.06 -2.91 -0.02 2.40 15 25 H 0.16 2.10 8.06 -2.91 -0.02 2.07 15 26 H 0.15 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.12 4.27 6.84 -2.91 -0.02 4.25 15 Total: -1.00 -71.61 262.38 4.11 -67.51 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.52 Total: 13.94 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 2.61 Total: -26.43 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.29 Total: -52.74 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.18 Total: -43.39 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -1.16 Total: -5.61 kcal Total: -71.61 4.11 -67.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034079467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.475 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds