Wall clock time and date at job start Mon Mar 30 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37556 * 120.06969 * 2 1 4 4 C 1.38659 * 121.20781 * 180.02562 * 3 2 1 5 5 C 1.38087 * 121.30240 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.98555 * 179.97438 * 5 4 3 7 7 C 1.39575 * 120.02538 * 359.66502 * 5 4 3 8 8 C 1.46786 * 120.58080 * 180.32249 * 7 5 4 9 9 O 1.21384 * 120.00411 * 266.64182 * 8 7 5 10 10 Cl 1.73602 * 119.99699 * 86.64638 * 8 7 5 11 11 C 1.40786 * 120.07256 * 180.02562 * 2 1 3 12 12 C 1.40767 * 120.61372 * 359.97438 * 11 2 1 13 13 H 1.08001 * 119.99418 * 135.73661 * 12 11 2 14 14 C 1.40361 * 120.00042 * 315.73534 * 12 11 2 15 15 N 1.30582 * 119.99855 * 335.88778 * 14 12 11 16 16 Si 1.86797 * 119.99795 * 155.61505 * 14 12 11 17 17 H 1.48501 * 109.47172 * 180.27405 * 16 14 12 18 18 H 1.48502 * 109.47182 * 300.27516 * 16 14 12 19 19 H 1.48506 * 109.47214 * 60.27852 * 16 14 12 20 20 H 1.09003 * 109.46894 * 269.97926 * 1 2 3 21 21 H 1.09001 * 109.46913 * 29.97283 * 1 2 3 22 22 H 1.08997 * 109.47069 * 149.97390 * 1 2 3 23 23 H 1.07995 * 119.39316 * 0.02562 * 3 2 1 24 24 H 1.08009 * 119.34780 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47059 * 90.00004 * 6 5 4 26 26 H 1.08997 * 109.46915 * 209.99827 * 6 5 4 27 27 H 1.08998 * 109.47217 * 330.00082 * 6 5 4 28 28 H 0.96996 * 119.99836 * 355.60008 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1904 0.0000 4 6 3.5825 1.2180 -0.0005 5 6 4.3233 0.0526 -0.0016 6 6 5.8289 0.1172 -0.0027 7 6 3.6781 -1.1851 0.0049 8 6 4.4534 -2.4314 0.0109 9 8 4.7214 -2.9846 -1.0357 10 17 4.9871 -3.1143 1.5151 11 6 2.2125 -1.2184 -0.0005 12 6 1.5233 -2.4458 -0.0006 13 1 1.8428 -3.2444 -0.6537 14 6 0.4210 -2.6317 0.8483 15 7 0.3051 -1.9158 1.9342 16 14 -0.8840 -3.8979 0.4205 17 1 -1.9382 -3.8951 1.4664 18 1 -1.4891 -3.5608 -0.8931 19 1 -0.2623 -5.2446 0.3481 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6475 2.1206 0.0004 24 1 4.0931 2.1698 -0.0001 25 1 6.1927 0.1323 1.0246 26 1 6.2296 -0.7562 -0.5172 27 1 6.1534 1.0221 -0.5164 28 1 1.0115 -1.3014 2.1877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039057377.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:30 Heat of formation + Delta-G solvation = -58.730155 kcal Electronic energy + Delta-G solvation = -14809.359637 eV Core-core repulsion = 12235.653351 eV Total energy + Delta-G solvation = -2573.706286 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81187 -39.30244 -37.32683 -36.38517 -33.85249 -31.86596 -29.86611 -27.89976 -25.47240 -25.02397 -22.37146 -20.99316 -19.34501 -17.93048 -17.17957 -16.99273 -16.25604 -15.67103 -15.30284 -14.86967 -14.60392 -14.25807 -13.92321 -13.72219 -13.48155 -12.88442 -12.63681 -12.38896 -12.37567 -12.34410 -12.05370 -12.01754 -11.95286 -11.54826 -11.10721 -10.66641 -9.55266 -9.22762 -9.05985 -6.62023 0.23994 0.44402 0.85700 0.97505 1.50322 1.57566 1.77053 2.29925 2.64658 3.16676 3.82951 4.03538 4.18462 4.46372 4.55692 4.70593 4.74045 4.85084 4.92235 5.05404 5.10833 5.24980 5.44908 5.66013 5.70582 5.74406 5.76462 5.87830 6.14887 6.25626 6.65078 6.79450 8.05669 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.012231 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.364999 B = 2288.665684 C = 3158.748102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.192 4.192 3 C -0.066 4.066 4 C -0.225 4.225 5 C -0.023 4.023 6 C -0.115 4.115 7 C -0.290 4.290 8 C 0.506 3.494 9 O -0.460 6.460 10 Cl -0.134 7.134 11 C 0.115 3.885 12 C -0.558 4.558 13 H 0.055 0.945 14 C 0.023 3.977 15 N -0.793 5.793 16 Si 1.097 2.903 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.271 1.271 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 3.742 -0.239 4.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.193 4.193 3 C -0.084 4.084 4 C -0.243 4.243 5 C -0.024 4.024 6 C -0.171 4.171 7 C -0.293 4.293 8 C 0.358 3.642 9 O -0.335 6.335 10 Cl -0.108 7.108 11 C 0.113 3.887 12 C -0.586 4.586 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.415 5.415 16 Si 0.915 3.085 17 H -0.187 1.187 18 H -0.185 1.185 19 H -0.196 1.196 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.147 0.853 24 H 0.156 0.844 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.346 2.789 -0.126 3.100 hybrid contribution 1.717 0.254 -0.340 1.769 sum 3.063 3.044 -0.466 4.343 Atomic orbital electron populations 1.20647 0.91465 1.00814 1.01135 1.20193 0.96097 0.92516 1.10520 1.21019 0.94561 0.96873 0.95948 1.20565 0.93484 0.96905 1.13371 1.19826 0.96123 0.91093 0.95348 1.20894 0.90177 1.02901 1.03160 1.20646 0.94102 0.90179 1.24380 1.24365 0.73089 0.83364 0.83373 1.90586 1.50513 1.60943 1.31476 1.98463 1.87758 1.85361 1.39222 1.18532 0.88170 0.93739 0.88308 1.20389 1.14928 0.99689 1.23622 0.92670 1.27869 0.99727 1.00629 0.91310 1.70462 1.34937 1.17237 1.18829 0.83255 0.73894 0.73560 0.77790 1.18715 1.18536 1.19605 0.92378 0.92053 0.93228 0.85327 0.84444 0.89689 0.93823 0.88677 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.54 8.25 71.24 0.59 -2.95 15 2 C -0.19 -8.72 5.19 -19.40 -0.10 -8.82 15 3 C -0.07 -2.57 9.62 22.21 0.21 -2.36 15 4 C -0.22 -8.28 9.64 22.33 0.22 -8.06 15 5 C -0.02 -0.94 5.92 -19.58 -0.12 -1.05 15 6 C -0.11 -3.60 9.62 71.24 0.69 -2.92 15 7 C -0.29 -13.63 5.83 -18.54 -0.11 -13.73 15 8 C 0.51 23.44 4.92 70.06 0.34 23.79 15 9 O -0.46 -22.85 17.92 -3.35 -0.06 -22.91 15 10 Cl -0.13 -5.45 29.18 -2.72 -0.08 -5.53 15 11 C 0.12 5.81 4.97 -19.86 -0.10 5.71 15 12 C -0.56 -29.07 7.64 23.41 0.18 -28.89 15 13 H 0.06 3.05 7.92 -2.91 -0.02 3.02 15 14 C 0.02 1.12 3.30 85.40 0.28 1.40 15 15 N -0.79 -39.46 11.28 21.90 0.25 -39.21 15 16 Si 1.10 42.37 29.84 68.60 2.05 44.41 15 17 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 20 H 0.06 2.53 6.59 -2.39 -0.02 2.52 15 21 H 0.06 2.17 8.08 -2.39 -0.02 2.15 15 22 H 0.05 2.21 6.16 -2.39 -0.01 2.19 15 23 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 24 H 0.14 4.03 8.06 -2.91 -0.02 4.01 15 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.04 1.45 7.11 -2.39 -0.02 1.43 15 27 H 0.09 2.40 8.08 -2.39 -0.02 2.38 15 28 H 0.28 14.73 7.21 -92.71 -0.67 14.06 15 Total: -1.00 -55.68 259.85 5.52 -50.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.28 Total: 10.96 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 2.08 Total: -37.88 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.25 Total: -39.21 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.06 Total: -22.91 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.05 Total: 44.41 kcal Atomic # 17 Polarization: -5.45 SS G_CDS: -0.08 Total: -5.53 kcal Total: -55.68 5.52 -50.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039057377.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.569 kcal (2) G-P(sol) polarization free energy of solvation -55.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds