Wall clock time and date at job start Mon Mar 30 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48499 * 109.46871 * 269.99985 * 3 2 1 5 5 H 1.48494 * 109.47145 * 29.99496 * 3 2 1 6 6 H 1.48502 * 109.47227 * 149.99944 * 3 2 1 7 7 C 1.40463 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.41022 * 120.00372 * 0.02562 * 7 2 1 10 10 O 1.21433 * 119.99876 * 359.97438 * 9 7 2 11 11 C 1.50697 * 120.00326 * 179.97438 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 11 9 7 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 9 14 14 C 1.35897 * 117.00481 * 180.02562 * 13 12 11 15 15 C 1.38774 * 120.03441 * 359.72088 * 14 13 12 16 16 C 1.38138 * 119.99122 * 179.74971 * 15 14 13 17 17 C 1.38257 * 120.07872 * 0.53010 * 16 15 14 18 18 C 1.38476 * 120.08328 * 359.74048 * 17 16 15 19 19 F 1.35105 * 119.99874 * 179.97438 * 18 17 16 20 20 C 1.38392 * 120.00736 * 359.97438 * 18 17 16 21 21 H 0.97006 * 119.99632 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99732 * 11 9 7 23 23 H 1.08998 * 109.46862 * 300.00535 * 11 9 7 24 24 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 25 25 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 26 26 H 1.07996 * 120.00577 * 0.02562 * 15 14 13 27 27 H 1.07993 * 119.96226 * 180.27412 * 16 15 14 28 28 H 1.07999 * 119.95967 * 179.77480 * 17 16 15 29 29 H 1.07997 * 120.03638 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0463 -1.4001 5 1 1.4368 2.6526 0.6999 6 1 3.5369 1.4400 0.7001 7 6 2.0074 -1.2165 0.0005 8 1 3.0875 -1.2166 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0879 -2.4377 0.0005 11 6 2.0556 -3.7429 0.0005 12 6 1.0614 -4.9058 0.0012 13 8 1.7758 -6.1434 0.0018 14 6 1.0356 -7.2831 0.0019 15 6 -0.3502 -7.2113 0.0072 16 6 -1.1017 -8.3704 0.0021 17 6 -0.4748 -9.6027 0.0027 18 6 0.9079 -9.6781 0.0030 19 9 1.5187 -10.8831 0.0041 20 6 1.6642 -8.5191 0.0022 21 1 -0.4850 0.8401 -0.0004 22 1 2.6823 -3.8007 0.8905 23 1 2.6823 -3.8006 -0.8894 24 1 0.4343 -4.8482 -0.8886 25 1 0.4351 -4.8478 0.8914 26 1 -0.8412 -6.2494 0.0109 27 1 -2.1802 -8.3140 0.0018 28 1 -1.0642 -10.5077 0.0023 29 1 2.7426 -8.5773 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041215573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:48 Heat of formation + Delta-G solvation = -129.351414 kcal Electronic energy + Delta-G solvation = -15671.178950 eV Core-core repulsion = 12666.073922 eV Total energy + Delta-G solvation = -3005.105029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.98301 -41.14767 -39.14915 -38.14358 -34.84567 -32.90542 -31.64544 -30.61034 -29.04551 -25.48300 -23.91590 -22.93469 -21.12729 -19.68360 -18.36986 -17.59290 -17.30875 -17.29730 -17.15642 -16.70114 -16.58963 -15.58515 -15.04737 -14.97530 -14.85594 -14.70941 -13.82439 -13.48914 -13.36078 -12.93067 -12.85514 -12.62471 -12.41826 -12.36303 -12.05542 -11.88077 -11.66941 -10.98903 -9.95231 -9.62026 -9.35517 -8.34417 -7.12929 0.06684 0.25069 1.35229 1.39147 1.55387 1.97999 2.15398 2.22722 2.54661 3.29608 3.33508 3.72510 3.95837 4.02971 4.06155 4.08811 4.24317 4.36087 4.40297 4.73752 4.95754 4.98631 5.01402 5.04375 5.18632 5.21408 5.33082 5.71000 5.95990 6.28421 6.69643 6.73986 8.20620 8.46589 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.072329 B = 0.004095 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.024824 B = 6835.616722 C = 7202.195165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.249 1.249 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.343 3.657 10 O -0.593 6.593 11 C -0.147 4.147 12 C 0.092 3.908 13 O -0.325 6.325 14 C 0.140 3.860 15 C -0.230 4.230 16 C -0.044 4.044 17 C -0.188 4.188 18 C 0.127 3.873 19 F -0.137 7.137 20 C -0.203 4.203 21 H 0.282 0.718 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.130 0.870 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -12.975 0.003 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.193 4.193 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.592 4.592 8 H 0.106 0.894 9 C 0.242 3.758 10 O -0.486 6.486 11 C -0.185 4.185 12 C 0.017 3.983 13 O -0.238 6.238 14 C 0.094 3.906 15 C -0.249 4.249 16 C -0.062 4.062 17 C -0.206 4.206 18 C 0.108 3.892 19 F -0.116 7.116 20 C -0.222 4.222 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.594 -12.963 0.008 12.977 hybrid contribution 0.342 0.652 -0.011 0.737 sum 0.936 -12.311 -0.003 12.346 Atomic orbital electron populations 1.70073 1.09797 1.29897 1.31801 1.27244 0.95509 1.05509 0.91072 0.85059 0.79017 0.74855 0.79753 1.18330 1.19304 1.17218 1.21307 0.96138 0.92657 1.49066 0.89360 1.20000 0.88719 0.89413 0.77680 1.90373 1.17196 1.89791 1.51279 1.21860 0.99218 0.93503 1.03917 1.22401 0.94666 0.79974 1.01241 1.85999 1.36677 1.13165 1.88004 1.18965 0.90583 0.86340 0.94693 1.21643 0.92724 1.01366 1.09150 1.21149 1.01583 0.89866 0.93572 1.21347 0.91985 1.00451 1.06835 1.17385 0.91288 0.79445 1.01093 1.91498 1.83792 1.42492 1.93818 1.20345 1.01747 0.88964 1.11156 0.90714 0.89387 0.89364 0.92555 0.92561 0.85178 0.81594 0.81748 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.34 11.72 21.91 0.26 -45.08 15 2 C 0.03 1.38 5.50 85.43 0.47 1.85 15 3 Si 0.99 38.49 29.56 68.60 2.03 40.52 15 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 15 7 C -0.56 -30.51 9.22 23.50 0.22 -30.29 15 8 H 0.09 4.34 7.85 -2.91 -0.02 4.31 15 9 C 0.34 18.97 6.90 26.37 0.18 19.16 15 10 O -0.59 -37.14 14.50 -3.51 -0.05 -37.19 15 11 C -0.15 -6.38 5.94 29.85 0.18 -6.21 15 12 C 0.09 3.69 4.03 71.98 0.29 3.98 15 13 O -0.32 -11.80 10.14 -92.39 -0.94 -12.73 15 14 C 0.14 4.46 6.68 22.50 0.15 4.61 15 15 C -0.23 -6.61 9.04 22.37 0.20 -6.41 15 16 C -0.04 -0.95 10.04 22.25 0.22 -0.73 15 17 C -0.19 -3.85 10.02 22.33 0.22 -3.63 15 18 C 0.13 3.12 7.30 22.36 0.16 3.28 15 19 F -0.14 -3.30 17.27 44.97 0.78 -2.53 15 20 C -0.20 -5.64 9.97 22.41 0.22 -5.42 15 21 H 0.28 14.53 8.29 -92.70 -0.77 13.76 15 22 H 0.09 3.55 8.14 -2.39 -0.02 3.53 15 23 H 0.09 3.56 8.14 -2.39 -0.02 3.54 15 24 H 0.06 2.34 7.63 -2.39 -0.02 2.32 15 25 H 0.06 2.33 7.61 -2.39 -0.02 2.32 15 26 H 0.13 3.99 6.30 -2.91 -0.02 3.97 15 27 H 0.17 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.16 2.34 8.06 -2.91 -0.02 2.32 15 29 H 0.15 3.77 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -66.73 267.29 5.76 -60.96 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.17 Total: 15.85 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 2.52 Total: -19.81 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.26 Total: -45.08 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.99 Total: -49.92 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -66.73 5.76 -60.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041215573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.387 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds