Wall clock time and date at job start Mon Mar 30 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86810 * 119.99862 * 2 1 4 4 H 1.48495 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46554 * 299.99865 * 3 2 1 6 6 H 1.48497 * 109.46964 * 59.99806 * 3 2 1 7 7 C 1.40457 * 120.00626 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.41030 * 119.99544 * 359.97438 * 7 2 1 10 10 O 1.21439 * 119.99858 * 0.02562 * 9 7 2 11 11 C 1.50697 * 119.99875 * 180.02562 * 9 7 2 12 12 C 1.53008 * 109.47139 * 180.02562 * 11 9 7 13 13 O 1.42895 * 109.47006 * 179.97438 * 12 11 9 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.96996 * 120.00514 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47470 * 60.00343 * 11 9 7 23 23 H 1.09003 * 109.47335 * 299.99568 * 11 9 7 24 24 H 1.09005 * 109.46539 * 60.00110 * 12 11 9 25 25 H 1.08995 * 109.46786 * 300.00247 * 12 11 9 26 26 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 28 28 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 29 29 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.6991 1.3465 -0.0006 5 1 1.8804 2.3964 -1.2126 6 1 1.8804 2.3965 1.2125 7 6 2.0076 -1.2163 0.0005 8 1 3.0875 -1.2163 0.0010 9 6 1.3025 -2.4377 0.0016 10 8 0.0881 -2.4377 0.0016 11 6 2.0560 -3.7427 0.0028 12 6 1.0618 -4.9058 0.0032 13 8 1.7764 -6.1432 0.0037 14 6 1.0360 -7.2834 0.0046 15 6 -0.3492 -7.2116 -0.0010 16 6 -1.1004 -8.3710 0.0052 17 6 -0.4711 -9.6043 0.0058 18 9 -1.2069 -10.7374 0.0057 19 6 0.9115 -9.6775 0.0060 20 6 1.6652 -8.5196 0.0052 21 1 -0.4851 0.8400 -0.0004 22 1 2.6827 -3.7997 0.8928 23 1 2.6827 -3.8013 -0.8872 24 1 0.4355 -4.8486 -0.8871 25 1 0.4348 -4.8474 0.8929 26 1 -0.8403 -6.2498 -0.0065 27 1 -2.1790 -8.3154 0.0049 28 1 1.4011 -10.6401 0.0069 29 1 2.7436 -8.5769 0.0050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041215575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:59 Heat of formation + Delta-G solvation = -111.413483 kcal Electronic energy + Delta-G solvation = -15648.773347 eV Core-core repulsion = 12644.446166 eV Total energy + Delta-G solvation = -3004.327181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.79646 -39.89557 -37.41478 -36.57622 -32.81318 -31.38099 -30.82357 -28.94022 -27.05953 -24.06324 -22.67191 -21.68667 -19.25758 -18.19889 -17.28587 -16.42975 -16.21817 -15.82417 -15.40309 -15.17784 -14.60370 -14.15331 -13.61133 -13.41160 -13.32568 -12.94889 -12.76367 -12.36637 -11.94255 -11.49389 -11.28996 -11.06748 -10.72529 -10.56184 -10.38149 -10.22233 -10.03319 -9.18704 -9.00917 -7.98532 -7.52609 -6.34211 -4.99452 1.16578 1.26590 2.99286 3.10048 3.14736 3.46946 3.61143 3.98413 4.13855 4.32828 4.72385 4.79419 5.15897 5.31209 5.32419 5.58547 5.68138 5.76168 5.87087 6.07894 6.11878 6.19120 6.33404 6.45195 6.72095 6.73822 6.80113 7.18545 7.63554 8.01409 8.73412 8.78258 10.23635 10.46005 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.073822 B = 0.004046 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.198025 B = 6918.569557 C = 7277.319718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.082 3.918 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.365 3.635 10 O -0.549 6.549 11 C -0.156 4.156 12 C 0.073 3.927 13 O -0.317 6.317 14 C 0.134 3.866 15 C -0.182 4.182 16 C -0.110 4.110 17 C 0.044 3.956 18 F -0.147 7.147 19 C -0.115 4.115 20 C -0.133 4.133 21 H 0.273 0.727 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -12.573 0.007 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.090 0.910 9 C 0.261 3.739 10 O -0.439 6.439 11 C -0.194 4.194 12 C -0.001 4.001 13 O -0.231 6.231 14 C 0.088 3.912 15 C -0.200 4.200 16 C -0.129 4.129 17 C 0.025 3.975 18 F -0.126 7.126 19 C -0.134 4.134 20 C -0.152 4.152 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.342 -12.526 0.006 12.598 hybrid contribution 0.241 0.670 0.001 0.712 sum 1.582 -11.856 0.008 11.961 Atomic orbital electron populations 1.69953 1.07550 1.28015 1.31187 1.26032 0.94624 1.01068 0.92454 0.86313 0.80857 0.81204 0.78529 1.18368 1.19846 1.19842 1.20783 0.95050 0.91677 1.48788 0.91007 1.19338 0.88913 0.87093 0.78602 1.90414 1.15432 1.88722 1.49351 1.22119 0.99342 0.95291 1.02675 1.22796 0.95592 0.79623 1.02047 1.86089 1.36412 1.13158 1.87413 1.19156 0.90059 0.87398 0.94637 1.21351 0.93019 0.99754 1.05922 1.20949 1.00837 0.90583 1.00536 1.17543 0.89358 0.82063 1.08534 1.91460 1.77205 1.49324 1.94577 1.20877 0.91765 0.99213 1.01549 1.20288 1.00701 0.88895 1.05304 0.91559 0.90728 0.90733 0.91671 0.91660 0.83807 0.84653 0.84450 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.88 11.72 55.57 0.65 -20.23 15 2 C 0.08 2.16 5.50 -17.27 -0.10 2.07 15 3 Si 0.91 18.99 29.56 -169.99 -5.03 13.97 15 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 7 C -0.53 -14.33 9.22 -37.69 -0.35 -14.68 15 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 15 9 C 0.37 9.83 6.90 -33.25 -0.23 9.60 15 10 O -0.55 -16.57 14.50 5.42 0.08 -16.50 15 11 C -0.16 -3.33 5.94 -27.88 -0.17 -3.50 15 12 C 0.07 1.43 4.03 37.16 0.15 1.58 15 13 O -0.32 -5.58 10.14 -19.58 -0.20 -5.77 15 14 C 0.13 2.08 6.69 -39.23 -0.26 1.82 15 15 C -0.18 -2.68 9.04 -39.44 -0.36 -3.04 15 16 C -0.11 -1.45 10.02 -39.53 -0.40 -1.85 15 17 C 0.04 0.58 7.30 -39.42 -0.29 0.29 15 18 F -0.15 -1.93 17.27 2.25 0.04 -1.89 15 19 C -0.12 -1.36 10.02 -39.53 -0.40 -1.76 15 20 C -0.13 -1.72 9.99 -39.44 -0.39 -2.12 15 21 H 0.27 6.91 8.29 -40.82 -0.34 6.58 15 22 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 23 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.07 1.29 7.61 -51.93 -0.40 0.90 15 25 H 0.07 1.29 7.63 -51.93 -0.40 0.90 15 26 H 0.14 2.17 6.30 -52.49 -0.33 1.84 15 27 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 267.29 15.07 4.03 4.03 Total: -1.00 -30.52 267.29 -5.99 -36.51 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -2.78 Total: 1.47 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.78 Total: -11.58 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.65 Total: -20.23 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.12 Total: -22.27 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.52 -5.99 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041215575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.908 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds