Wall clock time and date at job start Mon Mar 30 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86810 * 119.99862 * 2 1 4 4 H 1.48495 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46554 * 299.99865 * 3 2 1 6 6 H 1.48497 * 109.46964 * 59.99806 * 3 2 1 7 7 C 1.40457 * 120.00626 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.41030 * 119.99544 * 359.97438 * 7 2 1 10 10 O 1.21439 * 119.99858 * 0.02562 * 9 7 2 11 11 C 1.50697 * 119.99875 * 180.02562 * 9 7 2 12 12 C 1.53008 * 109.47139 * 180.02562 * 11 9 7 13 13 O 1.42895 * 109.47006 * 179.97438 * 12 11 9 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.96996 * 120.00514 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47470 * 60.00343 * 11 9 7 23 23 H 1.09003 * 109.47335 * 299.99568 * 11 9 7 24 24 H 1.09005 * 109.46539 * 60.00110 * 12 11 9 25 25 H 1.08995 * 109.46786 * 300.00247 * 12 11 9 26 26 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 28 28 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 29 29 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.6991 1.3465 -0.0006 5 1 1.8804 2.3964 -1.2126 6 1 1.8804 2.3965 1.2125 7 6 2.0076 -1.2163 0.0005 8 1 3.0875 -1.2163 0.0010 9 6 1.3025 -2.4377 0.0016 10 8 0.0881 -2.4377 0.0016 11 6 2.0560 -3.7427 0.0028 12 6 1.0618 -4.9058 0.0032 13 8 1.7764 -6.1432 0.0037 14 6 1.0360 -7.2834 0.0046 15 6 -0.3492 -7.2116 -0.0010 16 6 -1.1004 -8.3710 0.0052 17 6 -0.4711 -9.6043 0.0058 18 9 -1.2069 -10.7374 0.0057 19 6 0.9115 -9.6775 0.0060 20 6 1.6652 -8.5196 0.0052 21 1 -0.4851 0.8400 -0.0004 22 1 2.6827 -3.7997 0.8928 23 1 2.6827 -3.8013 -0.8872 24 1 0.4355 -4.8486 -0.8871 25 1 0.4348 -4.8474 0.8929 26 1 -0.8403 -6.2498 -0.0065 27 1 -2.1790 -8.3154 0.0049 28 1 1.4011 -10.6401 0.0069 29 1 2.7436 -8.5769 0.0050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041215575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:58 Heat of formation + Delta-G solvation = -129.454774 kcal Electronic energy + Delta-G solvation = -15649.555676 eV Core-core repulsion = 12644.446166 eV Total energy + Delta-G solvation = -3005.109511 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83712 -41.12179 -39.14533 -38.10063 -34.84237 -32.80639 -32.13681 -30.21451 -28.98583 -25.56465 -23.84705 -22.95450 -21.13265 -19.45234 -18.51109 -18.18156 -17.54724 -17.24041 -17.00967 -16.51526 -15.77236 -15.48248 -15.04076 -14.97208 -14.81697 -14.55907 -13.96952 -13.65440 -13.49607 -13.23711 -12.86117 -12.52262 -12.38032 -12.35754 -11.99228 -11.75348 -11.60546 -11.00424 -10.21623 -9.61430 -9.14389 -8.34184 -7.12624 0.13244 0.16910 1.33833 1.39304 1.57113 2.09486 2.15596 2.24390 2.53832 3.28548 3.34060 3.67445 3.79249 4.03727 4.09738 4.13144 4.30991 4.37904 4.48443 4.78577 4.90725 5.00200 5.03136 5.09396 5.10414 5.19104 5.26072 5.70460 5.96705 6.32217 6.70071 6.74687 8.21201 8.47076 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.073822 B = 0.004046 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.198025 B = 6918.569557 C = 7277.319718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.025 3.975 3 Si 0.995 3.005 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.342 3.658 10 O -0.594 6.594 11 C -0.145 4.145 12 C 0.091 3.909 13 O -0.322 6.322 14 C 0.104 3.896 15 C -0.194 4.194 16 C -0.114 4.114 17 C 0.042 3.958 18 F -0.146 7.146 19 C -0.104 4.104 20 C -0.126 4.126 21 H 0.282 0.718 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -13.213 0.009 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.194 4.194 3 Si 0.814 3.186 4 H -0.169 1.169 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.107 0.893 9 C 0.240 3.760 10 O -0.488 6.488 11 C -0.183 4.183 12 C 0.016 3.984 13 O -0.236 6.236 14 C 0.059 3.941 15 C -0.213 4.213 16 C -0.132 4.132 17 C 0.023 3.977 18 F -0.124 7.124 19 C -0.122 4.122 20 C -0.144 4.144 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.190 0.810 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.046 -13.200 0.008 13.547 hybrid contribution -0.328 0.728 0.000 0.798 sum 2.718 -12.472 0.009 12.765 Atomic orbital electron populations 1.70077 1.09848 1.29828 1.31951 1.27259 0.95493 1.05581 0.91066 0.85010 0.79602 0.75146 0.78890 1.16891 1.18998 1.18990 1.21335 0.96159 0.92612 1.48952 0.89263 1.20053 0.88719 0.89557 0.77632 1.90377 1.17295 1.89841 1.51278 1.21842 0.99151 0.93353 1.03998 1.22365 0.94699 0.80420 1.00944 1.86022 1.36266 1.12997 1.88271 1.19500 0.90438 0.87457 0.96750 1.21313 0.93167 0.99879 1.06966 1.21098 1.01697 0.90296 1.00143 1.17714 0.90043 0.81863 1.08084 1.91469 1.77311 1.49141 1.94521 1.21222 0.91176 1.00261 0.99550 1.20566 1.01951 0.87922 1.03993 0.90755 0.89251 0.89257 0.92892 0.92888 0.85159 0.83139 0.81035 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.58 11.72 21.91 0.26 -45.32 15 2 C 0.03 1.34 5.50 85.43 0.47 1.81 15 3 Si 0.99 38.48 29.56 68.60 2.03 40.51 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 7 C -0.56 -30.37 9.22 23.50 0.22 -30.16 15 8 H 0.09 4.37 7.85 -2.92 -0.02 4.34 15 9 C 0.34 18.87 6.90 26.37 0.18 19.06 15 10 O -0.59 -37.41 14.50 -3.52 -0.05 -37.46 15 11 C -0.15 -6.25 5.94 29.85 0.18 -6.07 15 12 C 0.09 3.62 4.03 71.98 0.29 3.91 15 13 O -0.32 -11.24 10.14 -92.99 -0.94 -12.18 15 14 C 0.10 3.17 6.69 22.50 0.15 3.32 15 15 C -0.19 -5.81 9.04 22.36 0.20 -5.60 15 16 C -0.11 -2.91 10.02 22.30 0.22 -2.68 15 17 C 0.04 1.01 7.30 22.37 0.16 1.17 15 18 F -0.15 -3.48 17.27 44.97 0.78 -2.71 15 19 C -0.10 -2.13 10.02 22.30 0.22 -1.91 15 20 C -0.13 -2.97 9.99 22.36 0.22 -2.75 15 21 H 0.28 14.54 8.29 -92.71 -0.77 13.77 15 22 H 0.09 3.54 8.14 -2.39 -0.02 3.52 15 23 H 0.09 3.54 8.14 -2.39 -0.02 3.52 15 24 H 0.05 2.21 7.61 -2.38 -0.02 2.19 15 25 H 0.05 2.21 7.63 -2.39 -0.02 2.19 15 26 H 0.13 4.18 6.30 -2.91 -0.02 4.16 15 27 H 0.15 3.26 8.06 -2.91 -0.02 3.24 15 28 H 0.17 2.36 8.06 -2.91 -0.02 2.34 15 29 H 0.16 3.04 8.06 -2.91 -0.02 3.02 15 Total: -1.00 -66.98 267.29 5.76 -61.22 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.17 Total: 15.85 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 2.52 Total: -19.91 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.26 Total: -45.32 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.99 Total: -49.64 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -66.98 5.76 -61.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041215575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.234 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds