Wall clock time and date at job start Mon Mar 30 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48505 * 109.46700 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47444 * 119.99563 * 3 2 1 7 7 C 1.40463 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99347 * 180.02562 * 7 2 1 9 9 C 1.41022 * 120.00372 * 0.02562 * 7 2 1 10 10 O 1.21433 * 119.99876 * 359.97438 * 9 7 2 11 11 C 1.50697 * 120.00326 * 179.97438 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.38239 * 120.00487 * 100.00100 * 13 12 11 15 15 C 1.38220 * 120.01336 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.02394 * 0.03851 * 15 14 13 17 17 C 1.38197 * 120.01707 * 359.97438 * 16 15 14 18 18 C 1.38331 * 120.00622 * 279.72913 * 13 12 11 19 19 Cl 1.73596 * 120.01445 * 359.97409 * 18 13 12 20 20 H 0.97006 * 119.99632 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99732 * 11 9 7 22 22 H 1.08998 * 109.46862 * 300.00535 * 11 9 7 23 23 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 24 24 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 25 25 H 1.08002 * 119.99356 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.98661 * 180.02562 * 15 14 13 27 27 H 1.07999 * 119.99473 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.00665 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 3.0931 1.6962 -1.2126 5 1 1.2743 2.7464 -0.0006 6 1 3.0930 1.6964 1.2125 7 6 2.0074 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0879 -2.4377 0.0005 11 6 2.0556 -3.7429 0.0005 12 6 1.0614 -4.9058 0.0012 13 6 1.8148 -6.2109 0.0006 14 6 1.9812 -6.9137 1.1793 15 6 2.6718 -8.1110 1.1788 16 6 3.1971 -8.6061 -0.0003 17 6 3.0317 -7.9044 -1.1793 18 6 2.3351 -6.7088 -1.1805 19 17 2.1199 -5.8307 -2.6625 20 1 -0.4850 0.8401 -0.0004 21 1 2.6823 -3.8007 0.8905 22 1 2.6823 -3.8006 -0.8894 23 1 0.4343 -4.8482 -0.8886 24 1 0.4351 -4.8478 0.8914 25 1 1.5716 -6.5270 2.1008 26 1 2.8012 -8.6598 2.0999 27 1 3.7370 -9.5415 -0.0001 28 1 3.4417 -8.2916 -2.1003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041216986.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:19 Heat of formation + Delta-G solvation = -60.860579 kcal Electronic energy + Delta-G solvation = -13998.343885 eV Core-core repulsion = 11424.545217 eV Total energy + Delta-G solvation = -2573.798668 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.44287 -38.91349 -37.34384 -35.08960 -34.40306 -31.65466 -30.79812 -28.82800 -25.41226 -23.59423 -22.30491 -20.95202 -18.45104 -17.84389 -17.15449 -16.80277 -16.19231 -15.37500 -15.23642 -15.13297 -14.70224 -14.31655 -13.96537 -13.40305 -13.27254 -12.84640 -12.71454 -12.50249 -12.35229 -12.30325 -12.21258 -12.03041 -11.66784 -11.53498 -10.95962 -9.86046 -9.64873 -9.42097 -8.27566 -7.08801 0.23275 0.34806 1.25303 1.36209 1.36483 1.51427 2.20441 2.21321 2.71457 3.39237 3.75515 3.85491 4.12094 4.32260 4.43688 4.49745 4.53088 4.57715 4.82178 4.97363 5.04200 5.14060 5.19944 5.30179 5.37087 5.49200 5.58577 5.93499 5.97922 6.72951 6.82810 8.28980 8.52680 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.038609 B = 0.005816 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.049710 B = 4813.361981 C = 5047.783471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.340 3.660 10 O -0.592 6.592 11 C -0.135 4.135 12 C -0.056 4.056 13 C -0.084 4.084 14 C -0.119 4.119 15 C -0.107 4.107 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.055 4.055 19 Cl -0.084 7.084 20 H 0.281 0.719 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.135 0.865 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.588 -14.086 0.433 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.600 4.600 8 H 0.101 0.899 9 C 0.238 3.762 10 O -0.486 6.486 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.084 4.084 14 C -0.137 4.137 15 C -0.125 4.125 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.081 4.081 19 Cl -0.056 7.056 20 H 0.091 0.909 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.153 0.847 26 H 0.178 0.822 27 H 0.185 0.815 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.823 -13.982 0.297 16.024 hybrid contribution 0.011 1.056 -0.303 1.098 sum 7.834 -12.926 -0.007 15.115 Atomic orbital electron populations 1.70090 1.09821 1.29716 1.32369 1.27249 0.95486 1.05479 0.91067 0.85155 0.78569 0.74663 0.80532 1.17843 1.19282 1.17528 1.21341 0.95866 0.93162 1.49656 0.89902 1.20246 0.88790 0.90178 0.77011 1.90347 1.17438 1.89984 1.50797 1.21770 0.98747 0.94857 1.01959 1.20165 0.96719 0.90512 1.01990 1.19974 0.98734 0.96558 0.93172 1.21291 0.99844 0.95837 0.96751 1.21610 0.96010 0.94896 0.99973 1.21510 0.99521 1.00797 0.91022 1.21338 0.98218 0.92596 1.00961 1.21090 1.04114 0.96035 0.86870 1.98365 1.96149 1.76555 1.34495 0.90892 0.90760 0.91020 0.92802 0.92287 0.84682 0.82192 0.81549 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.91 11.72 21.91 0.26 -47.65 15 2 C 0.03 1.45 5.50 85.43 0.47 1.92 15 3 Si 0.99 40.56 29.56 68.60 2.03 42.59 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 15 6 H -0.25 -9.66 7.11 99.48 0.71 -8.95 15 7 C -0.57 -32.91 9.22 23.50 0.22 -32.69 15 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 15 9 C 0.34 20.03 6.90 26.37 0.18 20.21 15 10 O -0.59 -39.58 14.50 -3.51 -0.05 -39.63 15 11 C -0.14 -6.29 5.51 29.85 0.16 -6.13 15 12 C -0.06 -2.39 4.09 29.85 0.12 -2.27 15 13 C -0.08 -2.80 5.14 -19.84 -0.10 -2.91 15 14 C -0.12 -3.21 9.67 22.27 0.22 -2.99 15 15 C -0.11 -2.10 10.05 22.27 0.22 -1.88 15 16 C -0.11 -2.01 10.05 22.27 0.22 -1.78 15 17 C -0.11 -2.60 9.83 22.29 0.22 -2.38 15 18 C -0.05 -1.69 6.31 22.32 0.14 -1.55 15 19 Cl -0.08 -2.84 26.66 -2.72 -0.07 -2.91 15 20 H 0.28 15.23 8.29 -92.70 -0.77 14.47 15 21 H 0.07 3.20 8.14 -2.39 -0.02 3.18 15 22 H 0.07 3.22 7.30 -2.39 -0.02 3.20 15 23 H 0.05 2.50 7.30 -2.39 -0.02 2.49 15 24 H 0.06 2.59 7.96 -2.39 -0.02 2.57 15 25 H 0.14 3.39 8.04 -2.91 -0.02 3.37 15 26 H 0.16 2.01 8.06 -2.91 -0.02 1.99 15 27 H 0.17 1.72 8.06 -2.91 -0.02 1.69 15 28 H 0.15 2.75 8.06 -2.91 -0.02 2.72 15 Total: -1.00 -73.27 265.09 5.40 -67.87 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.16 Total: 12.18 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.08 Total: -32.44 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.26 Total: -47.65 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.05 Total: -39.63 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -73.27 5.40 -67.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041216986.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.012 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds