Wall clock time and date at job start Mon Mar 30 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86803 * 119.99614 * 2 1 4 4 H 1.48509 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47264 * 299.99805 * 3 2 1 6 6 H 1.48493 * 109.47367 * 60.00246 * 3 2 1 7 7 C 1.40455 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.41025 * 120.00043 * 359.97438 * 7 2 1 10 10 O 1.21432 * 119.99735 * 0.02562 * 9 7 2 11 11 C 1.50699 * 120.00131 * 179.97438 * 9 7 2 12 12 C 1.52997 * 109.47140 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47142 * 180.02562 * 12 11 9 14 14 C 1.38270 * 119.99101 * 270.27596 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99998 * 13 12 11 20 20 H 0.96996 * 120.00063 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46471 * 60.00361 * 11 9 7 22 22 H 1.08998 * 109.47585 * 300.00543 * 11 9 7 23 23 H 1.08998 * 109.47471 * 60.00114 * 12 11 9 24 24 H 1.09000 * 109.47154 * 299.99976 * 12 11 9 25 25 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 27 27 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 28 28 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6992 1.3465 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0876 -1.2163 -0.0010 9 6 1.3025 -2.4377 -0.0005 10 8 0.0882 -2.4377 -0.0005 11 6 2.0560 -3.7428 -0.0017 12 6 1.0618 -4.9057 -0.0021 13 6 1.8154 -6.2108 -0.0026 14 6 2.1659 -6.8060 -1.2004 15 6 2.8520 -8.0059 -1.2018 16 6 3.1982 -8.6057 -0.0054 17 6 2.8528 -8.0078 1.1932 18 17 3.2868 -8.7609 2.6960 19 6 2.1609 -6.8096 1.1939 20 1 -0.4850 0.8400 0.0004 21 1 2.6833 -3.8008 0.8879 22 1 2.6821 -3.8001 -0.8921 23 1 0.4348 -4.8474 -0.8918 24 1 0.4355 -4.8486 0.8882 25 1 1.8999 -6.3352 -2.1353 26 1 3.1217 -8.4726 -2.1377 27 1 3.7380 -9.5411 -0.0066 28 1 1.8906 -6.3425 2.1295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041216987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:46 Heat of formation + Delta-G solvation = -44.978456 kcal Electronic energy + Delta-G solvation = -13730.788695 eV Core-core repulsion = 11157.678727 eV Total energy + Delta-G solvation = -2573.109967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.31637 -36.94730 -36.39286 -33.38269 -32.47234 -30.64088 -29.26796 -26.93020 -23.86548 -22.55733 -20.98357 -19.05401 -16.86260 -16.21169 -15.51183 -15.40795 -15.06400 -13.87292 -13.71615 -13.50363 -13.41812 -12.89256 -12.61779 -11.69074 -11.63899 -11.49654 -11.30438 -11.17679 -10.86215 -10.85667 -10.67323 -10.22854 -10.13599 -9.98265 -8.92183 -8.78076 -8.53813 -7.35895 -6.21999 -4.88559 1.26054 1.38415 2.16064 3.03824 3.14342 3.19100 3.74010 4.04060 4.25288 4.86544 4.92799 5.19078 5.39584 5.44431 5.49912 5.68468 5.93613 6.08635 6.12334 6.29535 6.39666 6.46400 6.64358 6.81858 6.90499 7.01585 7.03690 7.27279 8.10900 8.84536 8.91640 10.35837 10.59472 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.040921 B = 0.004650 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.081101 B = 6020.369917 C = 6235.181062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.362 3.638 10 O -0.546 6.546 11 C -0.151 4.151 12 C -0.068 4.068 13 C -0.051 4.051 14 C -0.116 4.116 15 C -0.107 4.107 16 C -0.128 4.128 17 C -0.032 4.032 18 Cl -0.082 7.082 19 C -0.112 4.112 20 H 0.272 0.728 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -13.053 -0.023 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.257 3.743 10 O -0.436 6.436 11 C -0.189 4.189 12 C -0.105 4.105 13 C -0.051 4.051 14 C -0.134 4.134 15 C -0.125 4.125 16 C -0.147 4.147 17 C -0.058 4.058 18 Cl -0.053 7.053 19 C -0.130 4.130 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.550 -13.080 0.116 14.209 hybrid contribution 0.775 0.692 0.158 1.051 sum 6.324 -12.388 0.274 13.912 Atomic orbital electron populations 1.69963 1.07486 1.27753 1.31821 1.26018 0.94571 1.00920 0.92503 0.86382 0.80891 0.81539 0.78457 1.18469 1.19928 1.19913 1.20853 0.94909 0.92050 1.49089 0.91338 1.19497 0.88984 0.87687 0.78157 1.90396 1.15548 1.88846 1.48764 1.22054 0.98820 0.96754 1.01279 1.20447 0.97187 0.88979 1.03897 1.20310 0.96174 0.96614 0.91998 1.21248 0.98488 0.95366 0.98327 1.21068 0.98450 0.95672 0.97354 1.20928 1.02080 1.00786 0.90897 1.20909 1.02368 0.95785 0.86742 1.98351 1.92018 1.81832 1.33106 1.21030 0.98834 0.93924 0.99244 0.91736 0.91837 0.91822 0.90601 0.90729 0.85351 0.85411 0.85493 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.48 11.72 55.57 0.65 -20.83 15 2 C 0.08 2.25 5.50 -17.27 -0.10 2.15 15 3 Si 0.90 19.50 29.56 -169.99 -5.03 14.47 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.54 -14.90 9.22 -37.69 -0.35 -15.24 15 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 15 9 C 0.36 9.97 6.90 -33.25 -0.23 9.74 15 10 O -0.55 -16.93 14.50 5.43 0.08 -16.85 15 11 C -0.15 -3.24 5.55 -27.89 -0.15 -3.39 15 12 C -0.07 -1.29 4.63 -27.88 -0.13 -1.42 15 13 C -0.05 -0.81 5.13 -104.63 -0.54 -1.34 15 14 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 15 15 C -0.11 -1.27 10.05 -39.59 -0.40 -1.67 15 16 C -0.13 -1.55 9.83 -39.55 -0.39 -1.94 15 17 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 15 18 Cl -0.08 -1.02 28.96 -51.86 -1.50 -2.52 15 19 C -0.11 -1.68 9.49 -39.55 -0.38 -2.05 15 20 H 0.27 7.05 8.29 -40.82 -0.34 6.71 15 21 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.08 1.50 8.04 -51.93 -0.42 1.08 15 24 H 0.07 1.49 8.04 -51.93 -0.42 1.08 15 25 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.13 1.94 8.06 -52.48 -0.42 1.51 15 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -31.16 269.14 -7.95 -39.11 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -2.92 Total: 0.41 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -3.29 Total: -17.85 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.65 Total: -20.83 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.08 Total: -16.85 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.16 -7.95 -39.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041216987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds