Wall clock time and date at job start Mon Mar 30 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86803 * 119.99614 * 2 1 4 4 H 1.48509 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47264 * 299.99805 * 3 2 1 6 6 H 1.48493 * 109.47367 * 60.00246 * 3 2 1 7 7 C 1.40455 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.41025 * 120.00043 * 359.97438 * 7 2 1 10 10 O 1.21432 * 119.99735 * 0.02562 * 9 7 2 11 11 C 1.50699 * 120.00131 * 179.97438 * 9 7 2 12 12 C 1.52997 * 109.47140 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47142 * 180.02562 * 12 11 9 14 14 C 1.38270 * 119.99101 * 270.27596 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99998 * 13 12 11 20 20 H 0.96996 * 120.00063 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46471 * 60.00361 * 11 9 7 22 22 H 1.08998 * 109.47585 * 300.00543 * 11 9 7 23 23 H 1.08998 * 109.47471 * 60.00114 * 12 11 9 24 24 H 1.09000 * 109.47154 * 299.99976 * 12 11 9 25 25 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 27 27 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 28 28 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6992 1.3465 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0876 -1.2163 -0.0010 9 6 1.3025 -2.4377 -0.0005 10 8 0.0882 -2.4377 -0.0005 11 6 2.0560 -3.7428 -0.0017 12 6 1.0618 -4.9057 -0.0021 13 6 1.8154 -6.2108 -0.0026 14 6 2.1659 -6.8060 -1.2004 15 6 2.8520 -8.0059 -1.2018 16 6 3.1982 -8.6057 -0.0054 17 6 2.8528 -8.0078 1.1932 18 17 3.2868 -8.7609 2.6960 19 6 2.1609 -6.8096 1.1939 20 1 -0.4850 0.8400 0.0004 21 1 2.6833 -3.8008 0.8879 22 1 2.6821 -3.8001 -0.8921 23 1 0.4348 -4.8474 -0.8918 24 1 0.4355 -4.8486 0.8882 25 1 1.8999 -6.3352 -2.1353 26 1 3.1217 -8.4726 -2.1377 27 1 3.7380 -9.5411 -0.0066 28 1 1.8906 -6.3425 2.1295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041216987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:46 Heat of formation + Delta-G solvation = -62.271135 kcal Electronic energy + Delta-G solvation = -13731.538561 eV Core-core repulsion = 11157.678727 eV Total energy + Delta-G solvation = -2573.859834 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44690 -38.94336 -37.46434 -35.04410 -34.36404 -31.69486 -30.83371 -28.85381 -25.45412 -23.60265 -22.32580 -20.94694 -18.45821 -17.81428 -17.12160 -16.70924 -16.35240 -15.41855 -15.30130 -15.12867 -14.62821 -14.39561 -13.97669 -13.40191 -13.29496 -12.96303 -12.76603 -12.47156 -12.38859 -12.21627 -12.17656 -11.97031 -11.71650 -11.67403 -10.98550 -9.88657 -9.68104 -9.43131 -8.27969 -7.08837 0.20079 0.31950 1.13811 1.33370 1.37686 1.55453 2.20060 2.21478 2.67135 3.39111 3.72459 3.89607 4.12352 4.28530 4.33972 4.48906 4.50331 4.59496 4.79003 4.98065 5.01895 5.15022 5.20787 5.26157 5.32986 5.41070 5.66214 5.87873 5.98820 6.73424 6.82654 8.28589 8.52501 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.040921 B = 0.004650 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.081101 B = 6020.369917 C = 6235.181062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.248 1.248 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.337 3.663 10 O -0.593 6.593 11 C -0.138 4.138 12 C -0.055 4.055 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.119 4.119 17 C -0.040 4.040 18 Cl -0.073 7.073 19 C -0.124 4.124 20 H 0.281 0.719 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.136 0.864 26 H 0.165 0.835 27 H 0.156 0.844 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -13.757 -0.669 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.811 3.189 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.599 4.599 8 H 0.102 0.898 9 C 0.235 3.765 10 O -0.487 6.487 11 C -0.176 4.176 12 C -0.092 4.092 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.114 4.114 16 C -0.137 4.137 17 C -0.067 4.067 18 Cl -0.044 7.044 19 C -0.143 4.143 20 H 0.091 0.909 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.183 0.817 27 H 0.174 0.826 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.788 -13.806 -0.527 15.860 hybrid contribution 0.087 0.826 0.368 0.908 sum 7.875 -12.981 -0.160 15.183 Atomic orbital electron populations 1.70091 1.09824 1.29625 1.32481 1.27247 0.95472 1.05528 0.91086 0.85054 0.79552 0.75344 0.78941 1.17054 1.18859 1.18985 1.21404 0.95926 0.93133 1.49421 0.89793 1.20307 0.88804 0.90327 0.77067 1.90355 1.17491 1.90020 1.50795 1.21816 0.98757 0.94682 1.02317 1.20173 0.96561 0.90371 1.02143 1.19977 0.97794 0.95750 0.93475 1.21423 0.98567 0.96261 0.97715 1.21443 0.96699 0.94426 0.98867 1.21333 1.00870 1.01373 0.90173 1.21015 1.02322 0.95448 0.87873 1.98353 1.91865 1.81463 1.32753 1.20999 0.99709 0.94902 0.98697 0.90896 0.90897 0.90270 0.92046 0.92883 0.84577 0.81728 0.82615 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.05 11.72 21.91 0.26 -46.79 15 2 C 0.03 1.39 5.50 85.43 0.47 1.86 15 3 Si 0.99 39.74 29.56 68.60 2.03 41.77 15 4 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.57 -31.94 9.22 23.49 0.22 -31.72 15 8 H 0.08 4.30 7.85 -2.91 -0.02 4.28 15 9 C 0.34 19.20 6.90 26.37 0.18 19.39 15 10 O -0.59 -38.62 14.50 -3.50 -0.05 -38.68 15 11 C -0.14 -6.04 5.55 29.85 0.17 -5.87 15 12 C -0.05 -2.18 4.63 29.85 0.14 -2.04 15 13 C -0.07 -2.20 5.13 -19.87 -0.10 -2.31 15 14 C -0.12 -3.17 9.70 22.27 0.22 -2.95 15 15 C -0.10 -1.94 10.05 22.26 0.22 -1.72 15 16 C -0.12 -2.47 9.83 22.29 0.22 -2.25 15 17 C -0.04 -1.02 6.32 22.32 0.14 -0.88 15 18 Cl -0.07 -1.69 28.96 -2.72 -0.08 -1.77 15 19 C -0.12 -3.70 9.49 22.29 0.21 -3.49 15 20 H 0.28 14.89 8.29 -92.71 -0.77 14.12 15 21 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 22 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 23 H 0.06 2.55 8.04 -2.39 -0.02 2.53 15 24 H 0.05 2.27 8.04 -2.39 -0.02 2.25 15 25 H 0.14 3.27 8.06 -2.91 -0.02 3.24 15 26 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 15 28 H 0.12 3.77 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -69.51 269.14 5.40 -64.12 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.16 Total: 13.34 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 2.08 Total: -31.98 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.26 Total: -46.79 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.05 Total: -38.68 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -69.51 5.40 -64.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041216987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.847 kcal (2) G-P(sol) polarization free energy of solvation -69.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds