Wall clock time and date at job start Mon Mar 30 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86806 * 120.00084 * 2 1 4 4 H 1.48501 * 109.47100 * 270.00700 * 3 2 1 5 5 H 1.48501 * 109.46641 * 30.00782 * 3 2 1 6 6 H 1.48496 * 109.46885 * 150.00355 * 3 2 1 7 7 C 1.40461 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.41027 * 119.99830 * 359.97438 * 7 2 1 10 10 O 1.21430 * 120.00240 * 0.02562 * 9 7 2 11 11 C 1.50700 * 119.99777 * 180.02562 * 9 7 2 12 12 C 1.53000 * 109.47104 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47104 * 179.97438 * 12 11 9 14 14 C 1.38239 * 119.98824 * 270.29704 * 13 12 11 15 15 C 1.38212 * 120.01553 * 180.25745 * 14 13 12 16 16 C 1.38361 * 119.98341 * 359.46433 * 15 14 13 17 17 Cl 1.73597 * 120.00859 * 180.27890 * 16 15 14 18 18 C 1.38346 * 119.97306 * 0.25744 * 16 15 14 19 19 C 1.38210 * 119.98768 * 0.02562 * 18 16 15 20 20 H 0.96998 * 120.00066 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47421 * 59.99863 * 11 9 7 22 22 H 1.09000 * 109.47406 * 300.00377 * 11 9 7 23 23 H 1.08993 * 109.47106 * 59.99994 * 12 11 9 24 24 H 1.08996 * 109.46854 * 299.99652 * 12 11 9 25 25 H 1.08004 * 119.99430 * 359.97438 * 14 13 12 26 26 H 1.08002 * 120.01126 * 179.75014 * 15 14 13 27 27 H 1.08002 * 120.00348 * 180.02562 * 18 16 15 28 28 H 1.08002 * 119.99295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4866 2.0465 -1.4001 5 1 1.4367 2.6526 0.7002 6 1 3.5368 1.4401 0.7000 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3023 -2.4377 -0.0005 10 8 0.0880 -2.4378 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 6 1.0616 -4.9058 -0.0012 13 6 1.8151 -6.2109 -0.0018 14 6 2.1661 -6.8055 -1.1994 15 6 2.8525 -8.0051 -1.2007 16 6 3.1981 -8.6053 -0.0029 17 17 4.0666 -10.1084 -0.0037 18 6 2.8517 -8.0068 1.1953 19 6 2.1602 -6.8101 1.1953 20 1 -0.4850 0.8400 0.0004 21 1 2.6826 -3.8006 0.8894 22 1 2.6826 -3.8006 -0.8905 23 1 0.4354 -4.8478 -0.8913 24 1 0.4347 -4.8482 0.8886 25 1 1.8998 -6.3349 -2.1344 26 1 3.1230 -8.4717 -2.1364 27 1 3.1216 -8.4746 2.1306 28 1 1.8893 -6.3430 2.1306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041216989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:22 Heat of formation + Delta-G solvation = -45.251206 kcal Electronic energy + Delta-G solvation = -13675.835813 eV Core-core repulsion = 11102.714019 eV Total energy + Delta-G solvation = -2573.121795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31838 -36.97785 -36.41569 -33.27332 -32.43592 -30.97447 -29.11733 -26.87980 -23.76858 -22.72957 -20.92756 -19.05313 -17.00662 -16.27279 -15.50974 -15.35347 -14.89475 -13.78469 -13.68583 -13.53159 -13.33613 -12.98616 -12.89134 -11.72690 -11.72118 -11.51683 -11.33736 -10.91235 -10.90609 -10.78819 -10.74199 -10.25268 -10.15310 -9.98483 -8.96388 -8.91946 -8.42110 -7.36524 -6.22566 -4.89340 1.26266 1.37617 2.14164 3.04703 3.13576 3.17160 3.73955 4.03392 4.24594 4.85873 4.93608 5.12413 5.41843 5.46941 5.47335 5.76499 5.90190 6.10967 6.13078 6.28363 6.29956 6.48012 6.65898 6.81638 6.89875 7.02107 7.03468 7.26512 8.09632 8.83747 8.90867 10.35214 10.58784 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.060758 B = 0.004164 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.733292 B = 6722.616463 C = 6873.329652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.083 3.917 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.362 3.638 10 O -0.547 6.547 11 C -0.151 4.151 12 C -0.069 4.069 13 C -0.057 4.057 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.050 4.050 17 Cl -0.085 7.085 18 C -0.109 4.109 19 C -0.109 4.109 20 H 0.272 0.728 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -13.022 -0.005 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.257 3.743 10 O -0.436 6.436 11 C -0.189 4.189 12 C -0.106 4.106 13 C -0.057 4.057 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.076 4.076 17 Cl -0.057 7.057 18 C -0.128 4.128 19 C -0.127 4.127 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.565 -13.115 -0.001 14.247 hybrid contribution 0.827 0.620 -0.008 1.033 sum 6.392 -12.495 -0.009 14.035 Atomic orbital electron populations 1.69953 1.07482 1.27861 1.31723 1.26021 0.94579 1.00914 0.92513 0.86428 0.80494 0.81168 0.79131 1.19475 1.20237 1.18626 1.20821 0.94872 0.92060 1.49167 0.91387 1.19493 0.88981 0.87689 0.78163 1.90396 1.15554 1.88844 1.48797 1.22053 0.98821 0.96760 1.01265 1.20450 0.97200 0.89128 1.03845 1.20463 0.95987 0.96640 0.92659 1.21103 0.98407 0.94633 0.98580 1.21007 0.99217 0.95942 0.96612 1.20841 1.01668 0.89727 0.95392 1.98343 1.75647 1.32694 1.98994 1.21003 0.99172 0.95995 0.96606 1.21105 0.98382 0.94657 0.98583 0.91677 0.91839 0.91846 0.90737 0.90731 0.85045 0.85334 0.85335 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.40 11.72 55.57 0.65 -20.75 15 2 C 0.08 2.24 5.50 -17.27 -0.10 2.14 15 3 Si 0.90 19.41 29.56 -169.99 -5.03 14.39 15 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.54 -14.82 9.22 -37.69 -0.35 -15.17 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 15 9 C 0.36 9.91 6.90 -33.25 -0.23 9.68 15 10 O -0.55 -16.87 14.50 5.43 0.08 -16.79 15 11 C -0.15 -3.20 5.55 -27.88 -0.15 -3.36 15 12 C -0.07 -1.30 4.63 -27.88 -0.13 -1.43 15 13 C -0.06 -0.89 5.13 -104.62 -0.54 -1.43 15 14 C -0.11 -1.53 9.70 -39.59 -0.38 -1.92 15 15 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 15 16 C -0.05 -0.64 6.32 -39.50 -0.25 -0.89 15 17 Cl -0.09 -0.98 28.96 -51.86 -1.50 -2.48 15 18 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 15 19 C -0.11 -1.53 9.70 -39.59 -0.38 -1.92 15 20 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.07 1.46 8.04 -51.93 -0.42 1.04 15 24 H 0.07 1.46 8.04 -51.93 -0.42 1.05 15 25 H 0.13 1.70 8.06 -52.48 -0.42 1.28 15 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -30.93 269.14 -7.95 -38.88 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -2.92 Total: 0.54 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -3.29 Total: -17.85 kcal Atomic # 7 Polarization: -21.40 SS G_CDS: 0.65 Total: -20.75 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.08 Total: -16.79 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.93 -7.95 -38.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041216989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.371 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds