Wall clock time and date at job start Mon Mar 30 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86806 * 120.00084 * 2 1 4 4 H 1.48501 * 109.47100 * 270.00700 * 3 2 1 5 5 H 1.48501 * 109.46641 * 30.00782 * 3 2 1 6 6 H 1.48496 * 109.46885 * 150.00355 * 3 2 1 7 7 C 1.40461 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.41027 * 119.99830 * 359.97438 * 7 2 1 10 10 O 1.21430 * 120.00240 * 0.02562 * 9 7 2 11 11 C 1.50700 * 119.99777 * 180.02562 * 9 7 2 12 12 C 1.53000 * 109.47104 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47104 * 179.97438 * 12 11 9 14 14 C 1.38239 * 119.98824 * 270.29704 * 13 12 11 15 15 C 1.38212 * 120.01553 * 180.25745 * 14 13 12 16 16 C 1.38361 * 119.98341 * 359.46433 * 15 14 13 17 17 Cl 1.73597 * 120.00859 * 180.27890 * 16 15 14 18 18 C 1.38346 * 119.97306 * 0.25744 * 16 15 14 19 19 C 1.38210 * 119.98768 * 0.02562 * 18 16 15 20 20 H 0.96998 * 120.00066 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47421 * 59.99863 * 11 9 7 22 22 H 1.09000 * 109.47406 * 300.00377 * 11 9 7 23 23 H 1.08993 * 109.47106 * 59.99994 * 12 11 9 24 24 H 1.08996 * 109.46854 * 299.99652 * 12 11 9 25 25 H 1.08004 * 119.99430 * 359.97438 * 14 13 12 26 26 H 1.08002 * 120.01126 * 179.75014 * 15 14 13 27 27 H 1.08002 * 120.00348 * 180.02562 * 18 16 15 28 28 H 1.08002 * 119.99295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4866 2.0465 -1.4001 5 1 1.4367 2.6526 0.7002 6 1 3.5368 1.4401 0.7000 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3023 -2.4377 -0.0005 10 8 0.0880 -2.4378 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 6 1.0616 -4.9058 -0.0012 13 6 1.8151 -6.2109 -0.0018 14 6 2.1661 -6.8055 -1.1994 15 6 2.8525 -8.0051 -1.2007 16 6 3.1981 -8.6053 -0.0029 17 17 4.0666 -10.1084 -0.0037 18 6 2.8517 -8.0068 1.1953 19 6 2.1602 -6.8101 1.1953 20 1 -0.4850 0.8400 0.0004 21 1 2.6826 -3.8006 0.8894 22 1 2.6826 -3.8006 -0.8905 23 1 0.4354 -4.8478 -0.8913 24 1 0.4347 -4.8482 0.8886 25 1 1.8998 -6.3349 -2.1344 26 1 3.1230 -8.4717 -2.1364 27 1 3.1216 -8.4746 2.1306 28 1 1.8893 -6.3430 2.1306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041216989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:22 Heat of formation + Delta-G solvation = -62.150301 kcal Electronic energy + Delta-G solvation = -13676.568613 eV Core-core repulsion = 11102.714019 eV Total energy + Delta-G solvation = -2573.854594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.44558 -38.93806 -37.46920 -34.98966 -34.26937 -32.01122 -30.69675 -28.77091 -25.34596 -23.77139 -22.26229 -20.92353 -18.44197 -17.96820 -17.17077 -16.70329 -16.15598 -15.32851 -15.27612 -15.10765 -14.41451 -14.41333 -14.27890 -13.39604 -13.38559 -13.01121 -12.75580 -12.44198 -12.43070 -12.16504 -12.01710 -11.91465 -11.80959 -11.63753 -10.96649 -9.99455 -9.66294 -9.37175 -8.26987 -7.07943 0.17030 0.34094 1.15472 1.35351 1.38112 1.54398 2.20909 2.22000 2.65727 3.40185 3.82618 3.82824 3.98032 4.26600 4.40733 4.51431 4.57347 4.58093 4.80737 5.00073 5.00188 5.19067 5.21023 5.25193 5.29283 5.36529 5.69974 5.85162 5.99337 6.74143 6.83738 8.29487 8.53309 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.060758 B = 0.004164 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.733292 B = 6722.616463 C = 6873.329652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.249 1.249 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.337 3.663 10 O -0.594 6.594 11 C -0.138 4.138 12 C -0.056 4.056 13 C -0.076 4.076 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.052 4.052 17 Cl -0.070 7.070 18 C -0.107 4.107 19 C -0.114 4.114 20 H 0.280 0.720 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.138 0.862 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 -13.484 -0.006 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.599 4.599 8 H 0.102 0.898 9 C 0.235 3.765 10 O -0.487 6.487 11 C -0.176 4.176 12 C -0.093 4.093 13 C -0.076 4.076 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.078 4.078 17 Cl -0.041 7.041 18 C -0.125 4.125 19 C -0.132 4.132 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.652 -13.602 -0.002 15.607 hybrid contribution 0.197 0.664 -0.009 0.693 sum 7.849 -12.938 -0.012 15.132 Atomic orbital electron populations 1.70086 1.09804 1.29660 1.32453 1.27246 0.95474 1.05518 0.91112 0.85109 0.79042 0.75074 0.79727 1.18342 1.19333 1.17252 1.21382 0.95926 0.93139 1.49466 0.89781 1.20310 0.88795 0.90354 0.77040 1.90355 1.17517 1.90033 1.50814 1.21820 0.98775 0.94632 1.02384 1.20181 0.96562 0.90399 1.02194 1.20178 0.97482 0.95756 0.94157 1.21202 0.98496 0.95224 0.98266 1.21219 0.98354 0.95249 0.97699 1.21028 1.01141 0.90187 0.95482 1.98353 1.75186 1.31596 1.98972 1.21215 0.98308 0.95306 0.97693 1.21204 0.98475 0.95241 0.98270 0.90914 0.90531 0.90520 0.92446 0.92440 0.84453 0.83107 0.83110 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.78 11.72 21.91 0.26 -46.53 15 2 C 0.03 1.37 5.50 85.43 0.47 1.84 15 3 Si 0.99 39.46 29.56 68.60 2.03 41.49 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 7 C -0.57 -31.66 9.22 23.50 0.22 -31.45 15 8 H 0.08 4.25 7.85 -2.91 -0.02 4.23 15 9 C 0.34 19.00 6.90 26.37 0.18 19.18 15 10 O -0.59 -38.34 14.50 -3.49 -0.05 -38.39 15 11 C -0.14 -5.94 5.55 29.85 0.17 -5.77 15 12 C -0.06 -2.16 4.63 29.85 0.14 -2.02 15 13 C -0.08 -2.32 5.13 -19.86 -0.10 -2.42 15 14 C -0.11 -3.06 9.70 22.26 0.22 -2.85 15 15 C -0.11 -2.47 9.83 22.29 0.22 -2.25 15 16 C -0.05 -1.20 6.32 22.32 0.14 -1.06 15 17 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 15 18 C -0.11 -2.47 9.83 22.29 0.22 -2.25 15 19 C -0.11 -3.06 9.70 22.26 0.22 -2.85 15 20 H 0.28 14.85 8.29 -92.71 -0.77 14.08 15 21 H 0.08 3.06 8.14 -2.38 -0.02 3.04 15 22 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 23 H 0.06 2.36 8.04 -2.39 -0.02 2.34 15 24 H 0.06 2.36 8.04 -2.39 -0.02 2.34 15 25 H 0.14 3.45 8.06 -2.91 -0.02 3.42 15 26 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 27 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.14 3.45 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -68.03 269.14 5.40 -62.64 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.16 Total: 14.18 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 2.08 Total: -31.90 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.26 Total: -46.53 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.05 Total: -38.39 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -68.03 5.40 -62.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041216989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.485 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds