Wall clock time and date at job start Mon Mar 30 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47305 * 270.00296 * 3 2 1 5 5 H 1.48505 * 109.47011 * 30.00199 * 3 2 1 6 6 H 1.48501 * 109.47349 * 150.00178 * 3 2 1 7 7 C 1.37876 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99866 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00024 * 179.97438 * 7 2 1 10 10 C 1.50703 * 109.47054 * 179.97438 * 9 7 2 11 11 O 1.20820 * 120.00118 * 359.97438 * 10 9 7 12 12 O 1.34226 * 119.99846 * 180.02562 * 10 9 7 13 13 C 1.45199 * 117.00067 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47586 * 180.02562 * 13 12 10 15 15 C 1.38219 * 120.00966 * 359.97438 * 14 13 12 16 16 C 1.38227 * 120.02402 * 179.72409 * 15 14 13 17 17 C 1.38263 * 120.05156 * 0.30685 * 16 15 14 18 18 C 1.38177 * 120.02526 * 359.97438 * 17 16 15 19 19 C 1.38439 * 120.01637 * 180.29637 * 14 13 12 20 20 F 1.35105 * 120.02463 * 359.97438 * 19 14 13 21 21 H 0.97004 * 119.99733 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47208 * 59.99981 * 9 7 2 23 23 H 1.08999 * 109.47521 * 299.99886 * 9 7 2 24 24 H 1.08996 * 109.47548 * 59.99127 * 13 12 10 25 25 H 1.09005 * 109.46709 * 299.99422 * 13 12 10 26 26 H 1.08002 * 119.99072 * 0.02562 * 15 14 13 27 27 H 1.07999 * 119.97012 * 180.27779 * 16 15 14 28 28 H 1.08004 * 119.99046 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.01271 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 8 3.2287 -3.5332 0.0000 12 8 5.3335 -2.8602 -0.0009 13 6 5.7452 -4.2526 -0.0014 14 6 7.2501 -4.3315 -0.0006 15 6 8.0031 -3.1725 -0.0002 16 6 9.3835 -3.2446 0.0063 17 6 10.0126 -4.4758 0.0059 18 6 9.2618 -5.6358 -0.0004 19 6 7.8789 -5.5649 -0.0071 20 9 7.1438 -6.6984 -0.0136 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 5.3555 -4.7465 -0.8915 25 1 5.3554 -4.7469 0.8885 26 1 7.5129 -2.2102 0.0000 27 1 9.9711 -2.3384 0.0112 28 1 11.0912 -4.5310 0.0106 29 1 9.7534 -6.5975 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049813651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:02 Heat of formation + Delta-G solvation = -131.289088 kcal Electronic energy + Delta-G solvation = -15868.555511 eV Core-core repulsion = 12863.366459 eV Total energy + Delta-G solvation = -3005.189052 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.00213 -41.49352 -39.92076 -37.57332 -35.13614 -33.33854 -31.91222 -31.49660 -27.90607 -25.64849 -23.80021 -22.63589 -21.71186 -19.29163 -18.70823 -18.19369 -17.72345 -17.57668 -17.04485 -16.69588 -16.52293 -15.93182 -15.09333 -15.07994 -14.79848 -14.28637 -14.18843 -13.66256 -13.56112 -13.16495 -12.94088 -12.47790 -12.45178 -12.04766 -11.98014 -11.91083 -11.62127 -11.29107 -10.82328 -9.95043 -9.67596 -8.31206 -6.42965 0.09323 0.23558 1.29987 1.42324 1.45738 1.55521 1.65282 2.36322 2.59916 3.01995 3.22957 3.42617 3.80389 3.97668 4.07375 4.07456 4.26315 4.37859 4.50864 4.65580 4.87471 4.92164 5.06768 5.16295 5.19830 5.39786 5.41813 5.53659 5.91293 6.18600 6.70204 6.89617 7.20960 8.85569 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.005094 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.700459 B = 5495.160312 C = 6134.406067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.228 1.228 7 C -0.548 4.548 8 H 0.033 0.967 9 C 0.002 3.998 10 C 0.474 3.526 11 O -0.542 6.542 12 O -0.349 6.349 13 C 0.106 3.894 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.122 4.122 17 C -0.082 4.082 18 C -0.150 4.150 19 C 0.080 3.920 20 F -0.151 7.151 21 H 0.271 0.729 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.202 -4.673 0.042 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.151 1.151 7 C -0.586 4.586 8 H 0.052 0.948 9 C -0.036 4.036 10 C 0.319 3.681 11 O -0.431 6.431 12 O -0.267 6.267 13 C 0.032 3.968 14 C -0.143 4.143 15 C -0.102 4.102 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.169 4.169 19 C 0.061 3.939 20 F -0.129 7.129 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.160 0.840 27 H 0.180 0.820 28 H 0.189 0.811 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 24.801 -4.933 0.046 25.287 hybrid contribution -1.086 -0.164 -0.026 1.099 sum 23.714 -5.097 0.020 24.256 Atomic orbital electron populations 1.70067 1.08757 1.28765 1.51023 1.26067 0.95799 1.03834 0.93180 0.85557 0.79892 0.76686 0.79887 1.18383 1.20878 1.15064 1.21096 0.90168 0.94264 1.53030 0.94829 1.19429 0.95341 0.86571 1.02212 1.24476 0.79201 0.94011 0.70403 1.90562 1.57649 1.48194 1.46659 1.86454 1.26050 1.29610 1.84552 1.21489 0.92155 0.80510 1.02611 1.19670 0.93442 0.94086 1.07116 1.21173 0.94758 0.97623 0.96653 1.21653 0.93448 0.99898 0.98945 1.21533 1.01964 0.90593 0.95911 1.21434 0.90142 1.02251 1.03056 1.17723 0.90611 0.80368 1.05211 1.91474 1.77813 1.49553 1.94107 0.91965 0.89661 0.89790 0.90810 0.90815 0.84026 0.82005 0.81084 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 15 2 C 0.01 0.51 5.47 84.65 0.46 0.97 15 3 Si 0.96 40.92 27.47 68.60 1.88 42.80 15 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.23 -8.40 6.54 99.48 0.65 -7.75 15 7 C -0.55 -32.41 9.48 25.60 0.24 -32.16 15 8 H 0.03 2.33 7.00 -2.91 -0.02 2.31 15 9 C 0.00 0.08 4.64 29.10 0.13 0.21 15 10 C 0.47 21.45 7.95 71.24 0.57 22.01 15 11 O -0.54 -28.90 15.21 21.98 0.33 -28.56 15 12 O -0.35 -12.72 8.69 -51.38 -0.45 -13.16 15 13 C 0.11 3.50 5.44 71.24 0.39 3.88 15 14 C -0.14 -3.77 5.89 -19.82 -0.12 -3.89 15 15 C -0.08 -1.84 9.38 22.26 0.21 -1.63 15 16 C -0.12 -1.79 10.04 22.27 0.22 -1.56 15 17 C -0.08 -1.02 10.04 22.26 0.22 -0.80 15 18 C -0.15 -2.48 10.03 22.31 0.22 -2.26 15 19 C 0.08 1.92 7.25 22.38 0.16 2.08 15 20 F -0.15 -4.09 16.80 44.97 0.76 -3.34 15 21 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 22 H 0.09 3.51 7.20 -2.39 -0.02 3.50 15 23 H 0.08 3.41 7.57 -2.39 -0.02 3.40 15 24 H 0.07 2.51 8.13 -2.39 -0.02 2.49 15 25 H 0.07 2.51 8.13 -2.38 -0.02 2.49 15 26 H 0.14 3.15 6.99 -2.91 -0.02 3.13 15 27 H 0.16 1.38 8.06 -2.91 -0.02 1.35 15 28 H 0.17 0.82 8.06 -2.91 -0.02 0.79 15 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 15 Total: -1.00 -73.98 265.99 6.66 -67.33 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.11 Total: 7.35 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 2.72 Total: -13.14 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.30 Total: -59.27 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.11 Total: -41.73 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.76 Total: -3.34 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.80 kcal Total: -73.98 6.66 -67.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049813651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.963 kcal (2) G-P(sol) polarization free energy of solvation -73.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds